Cyanidioschyzon merolae Genome Project v3

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CMW023C (492 aa)
by blastp 2.2.20 [Feb-08-2009] against nr [Jan-30-2013] (XML result)


NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae]

nad4 gene product (mitochondrion) [Pyropia yezoensis]

NADH dehydrogenase subunit 4 [Chara vulgaris]

NADH dehydrogenase subunit 4 (mitochondrion) [Porphyra umbilicalis]

NADH dehydrogenase subunit 4 [Nephroselmis olivacea]

NADH dehydrogenase subunit 4 [Porphyra purpurea]

NADH dehydrogenase subunit 4 [Funaria hygrometrica]

nad4 gene product (mitochondrion) [Nitella hyalina]

NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia haitanensis]

NADH dehydrogenase subunit 4 [Reclinomonas americana]

NADH dehydrogenase subunit 4 [Bathycoccus prasinos]

NADH dehydrogenase subunit 4 [Funaria hygrometrica]

nad4 [Ostreococcus tauri]

NADH dehydrogenase subunit 4 [Physcomitrella patens]

NADH dehydrogenase subunit 4 [Arabidopsis thaliana]

NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]

NADH dehydrogenase subunit 4 (mitochondrion) [Anomodon rugelii]

NADH dehydrogenase subunit 4 (mitochondrion) [Nicotiana tabacum]

NADH dehydrogenase subunit 4 [Brassica napus]

RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4

NADH dehydrogenase subunit 4 (mitochondrion) [Treubia lacunosa]

NADH dehydrogenase subunit 4 [Micromonas sp. RCC299]

NADH dehydrogenase subunit 4 [Marchantia polymorpha]

nad4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]

NADH dehydrogenase subunit 4 [Silene noctiflora]

NADH dehydrogenase subunit 4 [Silene latifolia]

NADH dehydrogenase subunit 4 [Isoetes engelmannii]

NADH dehydrogenase subunit 4 [Citrullus lanatus]

NADH dehydrogenase subunit 4 [Trebouxia aggregata]

NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum]

NADH dehydrogenase subunit 4 [Bambusa oldhamii]

RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4

NADH dehydrogenase subunit 4 [Cucurbita pepo]

NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus]

NADH dehydrogenase subunit 4 (mitochondrion) [Pleurozia purpurea]

NADH dehydrogenase subunit 4 (mitochondrion) [Lotus japonicus]

NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]

NADH dehydrogenase subunit 4 (mitochondrion) [Millettia pinnata]

NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Treubia lacunosa]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Treubia pygmaea]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Corsinia coriandra]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Ricciocarpos natans]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Bucegia romanica]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Riccia breidleri]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Sphaerocarpos donnellii]

NADH dehydrogenase subunit 4 [Mesostigma viride]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Asterella blumeana]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Conocephalum conicum]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Blasia pusilla]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Oxymitra incrassata]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Radula complanata]

NADH dehydrogenase subunit 4 (mitochondrion) [Silene noctiflora]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Lejeunea cavifolia]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Scapania nemorea]

nad4 gene product (mitochondrion) [Huperzia squarrosa]

NADH dehydrogenase subunit 4 (mitochondrion) [Mesostigma viride]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Herbertus sendtneri]

NADH dehydrogenase subunit 4 [Lactuca sativa]

NADH dehydrogenase subunit 4 (mitochondrion) [Gracilariopsis lemaneiformis]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Blepharostoma trichophyllum]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Frullania tamarisci]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Gymnomitrion concinnatum]

nad4 gene product (mitochondrion) [Gracilariophila oryzoides]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Andreaea nivalis]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Monoclea gottschei]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Trichocolea tomentella]

NADH dehydrogenase subunit 4 [Lunularia cruciata]

nad4 gene product (mitochondrion) [Gracilariopsis andersonii]

NADH dehydrogenase subunit 4 [Riccia fluitans]

NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Harpanthus flotovianus]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Anthelia julacea]

NADH dehydrogenase subunit 4 [Timmia megapolitana subsp. bavarica]

NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]

NADH dehydrogenase subunit 4 [Chondrus crispus]

nad4 gene product (mitochondrion) [Helicosporidium sp. ex Simulium jonesi]

NADH dehydrogenase subunit 4 [Corsinia coriandra]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Tritomaria quinquedentata]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Syzygiella autumnalis]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Ptilidium pulcherrimum]

NADH dehydrogenase subunit 4 [Micromonas pusilla CCMP1545]

NADH dehydrogenase subunit 4 [Coccomyxa subellipsoidea C-169]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Targionia hypophylla]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Calypogeia muelleriana]

NADH dehydrogenase subunit 4 [Plocamiocolax pulvinata]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Tetraphis pellucida]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Diplophyllum albicans]

NADH dehydrogenase subunit 4 [Oryza sativa Indica Group]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Mylia taylorii]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Sphagnum fallax]

nad4 (mitochondrion) [Brassica carinata]

NADH dehydrogenase subunit 4 (mitochondrion) [Raphanus sativus]

NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Riella sp. SC s.n.]

NADH dehydrogenase subunit 4 [Sphagnum fallax]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Porella platyphylla]

NADH dehydrogenase subunit 4 [Arabidopsis thaliana]

NADH dehydrogenase subunit 4 [Sorghum bicolor]

nad4 [Triticum aestivum]

NADH dehydrogenase subunit 4 [Hemiselmis andersenii]

NADH dehydrogenase subunit 4 [Ferrocalamus rimosivaginus]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Nardia scalaris]

NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Anastrophyllum minutum]

nad4 (mitochondrion) [Brassica oleracea]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Reboulia hemisphaerica]

nad4 gene product (mitochondrion) [Heterosigma akashiwo]

NADH dehydrogenase subunit 4 [Chattonella marina]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepidogyna hodgsoniae]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Apotreubia nana]

NADH dehydrogenase subunit 4 (mitochondrion) [Trebouxiophyceae sp. MX-AZ01]

NADH dehydrogenase subunit 4 [Zea mays subsp. mays]

NADH dehydrogenase subunit 4 [Rhodomonas salina]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Symphyogyna brongniartii]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Symphyogyna brasiliensis]

nad4 [Arabidopsis thaliana]

NADH dehydrogenase subunit 4 (mitochondrion) [Cyanophora paradoxa]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Metzgeria furcata]

NADH dehydrogenase subunit 4 [Rhizopus oryzae]

NADH dehydrogenase subunit 4 [Bazzania trilobata]

NADH dehydrogenase subunit 4 [Nicotiana tabacum]

NADH dehydrogenase subunit 4 [Megaceros aenigmaticus]

NADH dehydrogenase subunit 4 (mitochondrion) [Ricinus communis]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Metzgeria frontipilis]

NADH dehydrogenase subunit 4 [Carica papaya]

NADH dehydrogenase subunit M [Tistrella mobilis KA081020-065]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Lophocolea cuspidata]

nad4 gene product (mitochondrion) [Boea hygrometrica]

NADH dehydrogenase subunit 4 (mitochondrion) [Nannochloropsis gaditana]

NADH dehydrogenase subunit 4 (mitochondrion) [Malus x domestica]

NADH dehydrogenase subunit 4 [Synedra acus]

NADH dehydrogenase subunit 4 [Desmarestia viridis]

NADH dehydrogenase subunit 4 [Vigna radiata]

NADH dehydrogenase subunit 4 [Arabidopsis thaliana]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Plagiochila asplenioides]

NADH dehydrogenase subunit 4 [Cucumis sativus]

NADH dehydrogenase subunit 4 [Dictyota dichotoma]

NADH dehydrogenase subunit 4 [Thalassiosira pseudonana]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Fossombronia pusilla]

NADH dehydrogenase subunit 4 (mitochondrion) [Mimulus guttatus]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Noteroclada confluens]

NADH dehydrogenase subunit 4 [Cucumis melo subsp. melo]

nad4 gene product (mitochondrion) [Daucus carota subsp. sativus]

NADH dehydrogenase subunit 4 [Saccharina angustata]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Fossombronia cf. alaskana MGM031218-07SC]

NADH dehydrogenase subunit 4 [Saccharina japonica]

NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris]

proton-translocating NADH-quinone oxidoreductase subunit M [Xanthobacter autotrophicus Py2]

proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium australicum WSM2073]

NADH dehydrogenase subunit 4 [Saccharina coriacea]

NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium alhagi CCNWXJ12-2]

NADH:ubiquinone oxidoreductase subunit M [Agrobacterium albertimagni AOL15]

NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130]

proton-translocating NADH-quinone oxidoreductase, subunit M subfamily protein [Polymorphum gilvum SL003B-26A1]

NADH:ubiquinone oxidoreductase subunit M [Nitratireductor aquibiodomus RA22]

proton-translocating NADH-quinone oxidoreductase subunit M [Mesorhizobium opportunistum WSM2075]

NADH dehydrogenase subunit 4 [Vitis vinifera]

NADH:ubiquinone oxidoreductase subunit M [Thalassospira profundimaris WP0211]

NADH dehydrogenase subunit 4 [Pylaiella littoralis]

NADH:ubiquinone oxidoreductase subunit M [Thalassospira xiamenensis M-5 = DSM 17429]

NADH dehydrogenase subunit 4 [Ectocarpus siliculosus]

NADH dehydrogenase subunit M [Mesorhizobium loti MAFF303099]

NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium amorphae CCNWGS0123]

nad4 gene product (mitochondrion) [Phaeodactylum tricornutum]

NADH dehydrogenase subunit 4 (mitochondrion) [Selaginella moellendorffii]

proton-translocating NADH-quinone oxidoreductase, chain M [Phyllobacterium sp. YR531]

proton-translocating NADH-quinone oxidoreductase subunit M [Mesorhizobium ciceri biovar biserrulae WSM1271]

NADH dehydrogenase subunit M [Stappia aggregata IAM 12614]

NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA 257]

NADH dehydrogenase subunit M [Sinorhizobium meliloti 1021]

NADH dehydrogenase subunit M [Sinorhizobium medicae WSM419]

NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506]

Proton-translocating NADH-quinone oxidoreductase, chain M [Magnetospirillum gryphiswaldense MSR-1]

NADH dehydrogenase I subunit M [Sinorhizobium fredii HH103]

proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Labrenzia alexandrii DFL-11]

NADH dehydrogenase subunit M [Sinorhizobium fredii NGR234]

NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans SI85-9A1]

NADH-ubiquinone oxidoreductase chain M [Caenispirillum salinarum AK4]

NADH dehydrogenase subunit M [Chelativorans sp. BNC1]

NADH dehydrogenase subunit 4 (mitochondrion) [Spirodela polyrhiza]

NADH:ubiquinone oxidoreductase subunit M [Nitratireductor pacificus pht-3B]

NADH dehydrogenase subunit 4 (mitochondrion) [endosymbiont of Kryptoperidinium foliaceum]

NADH dehydrogenase subunit 4, partial (mitochondrion) [Aneura pinguis]

NADH dehydrogenase subunit 4 [Takakia lepidozioides]

NADH dehydrogenase subunit 4 (mitochondrion) [Phoenix dactylifera]

NADH:ubiquinone oxidoreductase subunit M [Nitratireductor indicus C115]

NADH dehydrogenase subunit 4 [Fucus vesiculosus]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium sp. CF122]

proton-translocating NADH-quinone oxidoreductase chain M protein [Azorhizobium caulinodans ORS 571]

proton-translocating NADH-quinone oxidoreductase subunit M [Hyphomicrobium denitrificans ATCC 51888]

proton-translocating NADH-quinone oxidoreductase subunit M [Parvibaculum lavamentivorans DS-1]

NADH dehydrogenase subunit 4 [Laminaria digitata]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella washoensis 085-0475]

NADH dehydrogenase subunit M [alpha proteobacterium BAL199]

NADH dehydrogenase subunit M [Rhizobium etli CFN 42]

NADH-quinone oxidoreductase subunit M [Azospirillum lipoferum 4B]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella alsatica IBS 382]

NADH dehydrogenase subunit M [Agrobacterium radiobacter K84]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium sp. AP16]

NADH-ubiquinone oxidoreductase subunit M [Pelagibacterium halotolerans B2]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WU95]

NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062]

Proton-translocating NADH-quinone oxidoreductase, chain M [Rhodospirillum photometricum DSM 122]

NADH dehydrogenase subunit M [Brucella abortus bv. 1 str. 9-941]

proton-translocating NADH-quinone oxidoreductase subunit M (NADH dehydrogenase I subunit M) [Methylocystis sp. SC2]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. viciae WSM1455]

NADH dehydrogenase subunit 4 [Haplomitrium mnioides]

proton-translocating NADH-quinone oxidoreductase, chain M [Afipia felis ATCC 53690]

NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium mesoamericanum STM3625]

NADH dehydrogenase subunit M [Agrobacterium sp. ATCC 31749]

NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. Pop5]

NADH dehydrogenase subunit M [Agrobacterium vitis S4]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella birtlesii LL-WM9]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2012]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2297]

NADH dehydrogenase I chain M [Agrobacterium fabrum str. C58]

NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens 5A]

NADH dehydrogenase subunit M [Brucella melitensis bv. 1 str. 16M]

proton-translocating NADH-quinone oxidoreductase, chain M [Brucella ceti str. Cudo]

NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4]

proton-translocating NADH-quinone oxidoreductase [Brucella ceti B1/94]

proton-translocating NADH-quinone oxidoreductase [Brucella sp. 83/13]

NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii WSM1325]

NADH-quinone oxidoreductase subunit m [Rhizobium tropici CIAT 899]

NADH dehydrogenase subunit M [Agrobacterium tumefaciens F2]

NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. viciae 3841]

NADH dehydrogenase subunit 4 [Emiliania huxleyi]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella vinsonii subsp. arupensis OK-94-513]

NADH dehydrogenase subunit M [Magnetospirillum magneticum AMB-1]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella vinsonii subsp. arupensis Pm136co]

NADH-quinone oxidoreductase subunit M [Hyphomicrobium sp. MC1]

proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM597]

NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii WSM2304]

NADH dehydrogenase subunit M [Bartonella henselae str. Houston-1]

NADH dehydrogenase subunit M [Brucella canis ATCC 23365]

proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]

NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. CCGE 510]

NADH:ubiquinone oxidoreductase subunit M [Rhizobium lupini HPC(L)]

proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO2]

NADH dehydrogenase subunit 4 [Saprolegnia ferax]

NADH:ubiquinone oxidoreductase subunit M [Ochrobactrum intermedium M86]

NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40]

proton-translocating NADH-quinone oxidoreductase, chain M [Ochrobactrum intermedium LMG 3301]

proton-translocating NADH-quinone oxidoreductase, chain M [Hyphomicrobium denitrificans 1NES1]

NADH dehydrogenase I subunit M [Agrobacterium sp. H13-3]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella elizabethae Re6043vi]

proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella washoensis Sb944nv]

NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli CNPAF512]

NADH-quinone oxidoreductase, subunit M [Azospirillum brasilense Sp245]
ref|NP_059361.1| NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae]
dbj|BAA36523.1| NADH-ubiquinone oxidoreductase chain 4 [Cyanidioschyzon merolae strain 10D]
(492 aa)

Score: 952 bits (2461), Expect: 0.0
Length: 492, Idn/Pos/Gap = 492/492/0 (100%/100%/0%)

Query:   1 MLWSFFHDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDE  60
           MLWSFFHDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDE
Sbjct:   1 MLWSFFHDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDE  60

Query:  61 SYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLI 120
           SYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLI
Sbjct:  61 SYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLI 120

Query: 121 LFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGS 180
           LFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGS
Sbjct: 121 LFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGS 180

Query: 181 LLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAH 240
           LLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAH
Sbjct: 181 LLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAH 240

Query: 241 AEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQ 300
           AEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQ
Sbjct: 241 AEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQ 300

Query: 301 VDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKT 360
           VDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKT
Sbjct: 301 VDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKT 360

Query: 361 RILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSG 420
           RILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSG
Sbjct: 361 RILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSG 420

Query: 421 IILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSI 480
           IILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSI
Sbjct: 421 IILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSI 480

Query: 481 HITILRLLTHII 492
           HITILRLLTHII
Sbjct: 481 HITILRLLTHII 492


ref|YP_006280872.1| nad4 gene product (mitochondrion) [Pyropia yezoensis]
gb|AFH57678.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia yezoensis]
(488 aa)

Score: 573 bits (1476), Expect: 7.75677e-161
Length: 482, Idn/Pos/Gap = 286/371/0 (59%/76%/0%)

Query:   9 SLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFV  68
           +LL+W +  PL G I++IFIPR    LIR  +   + L F+ +I LW+ F+ +   FQF+
Sbjct:   5 NLLLWTSLIPLCGAILLIFIPRFYSHLIRNIAFATAQLAFIYSILLWLCFESTTSLFQFI  64

Query:  69 ISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESL 128
            +        I Y +GVDGISLFFIILT+ LI VC L++WN  +   KE+LI F ++E++
Sbjct:  65 YTINWFPSYNIYYTIGVDGISLFFIILTTWLITVCTLISWNMPDSQIKEYLICFLLLEAI 124

Query: 129 LLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAIL 188
           L+  F  +D+L FYIFFE VLIP+F IIG++GSR RKIRA+YQFF+YTL GSLL+L+AIL
Sbjct: 125 LIQVFCVLDVLFFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLAGSLLMLLAIL 184

Query: 189 LIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGS 248
            IYF+ GTT+I  L+N++F  R Q+LLWLAFFAS AVK+PMIPFHIWLPEAHAEAPT+GS
Sbjct: 185 TIYFQHGTTDIQVLWNINFDVRTQILLWLAFFASLAVKIPMIPFHIWLPEAHAEAPTAGS 244

Query: 249 IILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVA 308
           +ILAG+LLK+GGYGFLRFSLPLFP AS Y++PLIY LSIIA IYASLTT+RQVDLKKI+A
Sbjct: 245 VILAGVLLKMGGYGFLRFSLPLFPEASLYFAPLIYLLSIIAAIYASLTTIRQVDLKKIIA 304

Query: 309 YSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSG 368
           YSS++H+G+V LG+FSFN QG+EGS++L+L HG VSSALFLCVG+LYDR+KTR+LKYY G
Sbjct: 305 YSSVSHMGFVTLGLFSFNSQGIEGSIILMLSHGLVSSALFLCVGILYDRHKTRLLKYYGG 364

Query: 369 LTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYC 428
           L   +P+F++LL FFT +NIG PGTS+F+GE ++L+G+ Q S I+T  S   +IL A Y 
Sbjct: 365 LVQVMPIFSILLLFFTFSNIGFPGTSSFVGELLVLMGVFQFSPISTFLSAFSMILGAGYS 424

Query: 429 LWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           +W +NR+ FG+LK  Y    QDIS++EF  L PL +  L MG+YP IFL  IH +   L+
Sbjct: 425 IWLFNRVCFGSLKLQYITNFQDISRREFCILFPLSVFVLWMGIYPEIFLSEIHCSSYNLI 484

Query: 489 TH 490
            +
Sbjct: 485 AY 486


ref|NP_943685.1| NADH dehydrogenase subunit 4 [Chara vulgaris]
gb|AAP92179.1| NADH dehydrogenase subunit 4 [Chara vulgaris]
(496 aa)

Score: 569 bits (1466), Expect: 1.21754e-159
Length: 475, Idn/Pos/Gap = 268/369/0 (56%/77%/0%)

Query:  16 NFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILN  75
            +PLLG +I++ IP +++ LIR  +   S +TFL ++  WI F+ S   FQFV + + L 
Sbjct:  17 KWPLLGALIVLLIPNSKIRLIRSIAFCTSLITFLYSLLFWIQFENSTAKFQFVETIRWLP  76

Query:  76 FELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFST 135
           +  I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F ++E+ ++  F  
Sbjct:  77 YSNINFYIGLDGISLFFVVLTTFLIPICMLVGWSSIQNYKKEYMIAFLVLEAFMIAVFCM 136

Query: 136 IDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETG 195
           +DLLLFY+FFE VLIP+F IIG++GSR RKIRA+YQFFLYTLLGS+ +L+AILLI F+TG
Sbjct: 137 LDLLLFYVFFESVLIPMFIIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILFQTG 196

Query: 196 TTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGIL 255
           TT++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGIL
Sbjct: 197 TTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIL 256

Query: 256 LKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHI 315
           LKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTTLRQ+DLKKI+AYSS+AH+
Sbjct: 257 LKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHM 316

Query: 316 GYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPL 375
            +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTR++KYY GL + +P+
Sbjct: 317 NFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLVSTMPI 376

Query: 376 FAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRL 435
           F+ +  FFTLANI LPGTS+FIGEF+IL+G  Q +      +  G+IL A+Y +W YNR+
Sbjct: 377 FSTIFLFFTLANISLPGTSSFIGEFLILVGAFQAAPNVATLAAIGMILGAAYSIWLYNRV 436

Query: 436 IFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +FGNLK  +     D++++EF   +P VI  + MG+YP +FL  +H ++  L+ H
Sbjct: 437 VFGNLKPYFIHKFSDLNRREFFMFLPFVIGVVWMGVYPEVFLECMHTSVSNLVQH 491


ref|YP_006665879.1| NADH dehydrogenase subunit 4 (mitochondrion) [Porphyra umbilicalis]
gb|AFC17782.1| NADH dehydrogenase subunit 4 (mitochondrion) [Porphyra umbilicalis]
(488 aa)

Score: 568 bits (1464), Expect: 2.07681e-159
Length: 483, Idn/Pos/Gap = 288/375/0 (59%/77%/0%)

Query:   8 DSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQF  67
           ++LLIW +  PL G I++I IP +   LIR  +   + LTF+++I LWI FD +   FQF
Sbjct:   4 NNLLIWTSLTPLSGVILLILIPGSYFNLIRNVAFGTAQLTFILSILLWICFDPTTSLFQF  63

Query:  68 VISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIES 127
           V +        I Y +G+DGISLFFI+LT+ L+  C L++WN      KE+LI F  +E 
Sbjct:  64 VYTINWFPSYNIYYTIGIDGISLFFIVLTTWLVTTCVLISWNMTNTQIKEYLICFLTLEF 123

Query: 128 LLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAI 187
           +L+  F  +D+L FYIFFE VLIP+F IIGI+GSR RKIRA+YQFF+YTL GSLL+L+AI
Sbjct: 124 ILIQVFCVLDVLFFYIFFESVLIPMFLIIGIWGSRQRKIRAAYQFFIYTLAGSLLMLLAI 183

Query: 188 LLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG 247
           L+IYF+ GTT+I  L+NV+F  R Q+LLWLAFFAS AVK+PMIPFHIWLPEAHAEAPT+G
Sbjct: 184 LIIYFQQGTTDIQILWNVNFDTRTQILLWLAFFASLAVKIPMIPFHIWLPEAHAEAPTAG 243

Query: 248 SIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIV 307
           S+ILAG+LLK+GGYGFLRFSLP+FP AS Y++PLIY LSIIA +YASLTT+RQVDLKKI+
Sbjct: 244 SVILAGVLLKMGGYGFLRFSLPMFPEASLYFAPLIYLLSIIAAVYASLTTIRQVDLKKII 303

Query: 308 AYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYS 367
           AYSS++H+G+V LG+FSFN+QGLEGS++L+L HG VSSALFLCVG+LYDR+KTRILKYY 
Sbjct: 304 AYSSVSHMGFVTLGLFSFNLQGLEGSIILMLSHGLVSSALFLCVGILYDRHKTRILKYYG 363

Query: 368 GLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASY 427
           GL   +P+F++LL FFT +NIG PGTS+F+GE ++LIGL Q S I+T  S   ++L A Y
Sbjct: 364 GLVQVMPIFSILLLFFTFSNIGFPGTSSFVGELLVLIGLFQFSAISTFLSAFSMVLGAGY 423

Query: 428 CLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
            +W +NR+ FG+LK  Y    QDIS++EF  L+PL +  L MG+YPN+FL+ IH +   L
Sbjct: 424 SIWLFNRVCFGSLKLQYITSFQDISRREFYTLLPLGVSVLWMGIYPNVFLNEIHCSSCNL 483

Query: 488 LTH 490
           +++
Sbjct: 484 ISY 486


ref|YP_665649.1| NADH dehydrogenase subunit 4 [Nephroselmis olivacea]
gb|AAF03176.1|AF110138_8 NADH dehydrogenase subunit 4 [Nephroselmis olivacea]
(500 aa)

Score: 568 bits (1464), Expect: 2.47453e-159
Length: 485, Idn/Pos/Gap = 267/373/3 (55%/76%/0%)

Query:   6 FHDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYF  65
           ++DSLL+++  FPLLG  ++ F+P +    +R  +L +S + F+ +++LWI FD S   F
Sbjct:  15 WNDSLLVFLLMFPLLGAALVFFLPFSY---VRSTALSVSLINFIASLFLWIQFDHSTPQF  71

Query:  66 QFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMI 125
           QFV     L    +  ++G+DGISLFF+IL++ L+ +C L+ W + + Y +E++I F ++
Sbjct:  72 QFVTKITWLPISNLHIYMGIDGISLFFVILSTFLVPICILVGWVSIQTYVREYVIAFLIL 131

Query: 126 ESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILI 185
           ES ++  F  +DLLLFY+FFE VLIP+F IIGI+GSR RKIRA+YQFFLYTL GS+L+L+
Sbjct: 132 ESCMIAVFCMLDLLLFYVFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVLMLL 191

Query: 186 AILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPT 245
           AI+LIYF+TGTT++  LY   F E++Q+LLWLAFFASFAVKVPM+P HIWLPEAH EAPT
Sbjct: 192 AIILIYFQTGTTDLQVLYTTSFSEKRQILLWLAFFASFAVKVPMVPVHIWLPEAHVEAPT 251

Query: 246 SGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKK 305
           SGS+ILAG+LLKLG YGFLRFS+P+FP AS Y++PLIYT+SIIA+IYASLTT+RQ+DLKK
Sbjct: 252 SGSVILAGVLLKLGTYGFLRFSIPMFPEASLYFTPLIYTMSIIAVIYASLTTIRQIDLKK 311

Query: 306 IVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKY 365
           ++AYSS+AH+ +V +G+FS NVQG+EGS+LL+L HG VSSALFLCVG LYDR+KTR++ Y
Sbjct: 312 VIAYSSVAHMAFVTIGLFSLNVQGIEGSILLMLSHGLVSSALFLCVGCLYDRHKTRLIPY 371

Query: 366 YSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSA 425
           Y      +P+F+V+  FFTL N+ LPGTS+F+GEF+IL+G  Q + + T  + +G++L A
Sbjct: 372 YGACVHTMPIFSVIFLFFTLGNLSLPGTSSFVGEFLILVGAFQNNTLITTLAATGMVLGA 431

Query: 426 SYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITIL 485
           +Y LW YNR++FGN K N+     D +++E    +PL+I  L MG+YP +FL  +H ++ 
Sbjct: 432 AYSLWLYNRVVFGNFKPNFINVYSDCNRREVFMFLPLIIAVLWMGIYPEVFLDPMHCSVA 491

Query: 486 RLLTH 490
            ++ H
Sbjct: 492 NVIQH 496


ref|NP_049306.1| NADH dehydrogenase subunit 4 [Porphyra purpurea]
gb|AAD03109.1| NADH dehydrogenase subunit 4 [Porphyra purpurea]
(488 aa)

Score: 567 bits (1460), Expect: 5.99239e-159
Length: 483, Idn/Pos/Gap = 282/370/0 (58%/76%/0%)

Query:   8 DSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQF  67
           ++LL+W +  PL G I++I IP +   LIR  +   + LTF+ +I LWI FD +   FQF
Sbjct:   4 NNLLMWTSLIPLGGVILLILIPGSYCNLIRNIAFGTAQLTFISSILLWICFDPTISLFQF  63

Query:  68 VISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIES 127
           V +        I Y +G+DGISLFFIILT+ L+  C L++W       KE+LI F  +E 
Sbjct:  64 VCTINWFPSYNIYYTIGIDGISLFFIILTTWLVTTCVLISWTMINTQIKEYLICFLTLEF 123

Query: 128 LLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAI 187
           +L+  F  +D++ FYIFFE VLIP+F IIGI+GSR RKIRA+YQFF+YTL GSLL+L+AI
Sbjct: 124 ILIQVFCVLDVIFFYIFFESVLIPMFLIIGIWGSRQRKIRAAYQFFIYTLAGSLLMLLAI 183

Query: 188 LLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG 247
           L+IYF+ GTT+I  L+NV F  R Q+LLWL+FF+S AVK+PMIPFHIWLPEAHAEAPT+G
Sbjct: 184 LVIYFQQGTTDIQILWNVSFDTRTQILLWLSFFSSLAVKIPMIPFHIWLPEAHAEAPTAG 243

Query: 248 SIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIV 307
           S+ILAG+LLK+GGYGFLRFSLP+ P AS Y+SPLIY LSI+A +YASLTT+RQVDLKKI+
Sbjct: 244 SVILAGVLLKMGGYGFLRFSLPMLPEASLYFSPLIYLLSIVAAVYASLTTIRQVDLKKII 303

Query: 308 AYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYS 367
           AYSS++H+G+V LG+FSFN+QGLEGS++L+L HG VSSALFLCVG+LYDR+KTRILKYY 
Sbjct: 304 AYSSVSHMGFVTLGLFSFNLQGLEGSIILMLSHGLVSSALFLCVGILYDRHKTRILKYYG 363

Query: 368 GLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASY 427
           GL   +P+F++LL FFT +NIG PGTS+F+GEF++L GL + S I+T  S   +IL A Y
Sbjct: 364 GLVQVMPIFSILLLFFTFSNIGFPGTSSFVGEFLVLTGLFKVSSISTFLSAFSMILGAGY 423

Query: 428 CLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
            +W +NR+ FG+LK  Y    QDIS++EF  L+PL +  L+MG+ P IFL+ IH +   L
Sbjct: 424 SIWLFNRICFGSLKLQYVTNFQDISRREFYILLPLAVSILLMGVCPEIFLNEIHCSSYNL 483

Query: 488 LTH 490
           +++
Sbjct: 484 ISY 486


gb|AEB39981.1| NADH dehydrogenase subunit 4 [Funaria hygrometrica]
(495 aa)

Score: 566 bits (1459), Expect: 7.63283e-159
Length: 473, Idn/Pos/Gap = 266/367/0 (56%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG II+  IP +++ LIR   L  S +TFL ++  WI FD S   FQFV + + L + 
Sbjct:  19 PLLGSIILFVIPDSRIRLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F + ES ++  F  +D
Sbjct:  79 NINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+F+TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+EGS+LL+L HG VSSALFLCVGVLYDR+KTR++KYY GL + +P+F+
Sbjct: 319 VTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR+IF
Sbjct: 379 TIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIF 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K  + +   D++++E +   P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491


ref|YP_006073021.1| nad4 gene product (mitochondrion) [Nitella hyalina]
gb|AEH42836.1| NADH dehydrogenase subunit 4 (mitochondrion) [Nitella hyalina]
(499 aa)

Score: 565 bits (1457), Expect: 1.52563e-158
Length: 466, Idn/Pos/Gap = 267/364/0 (57%/78%/0%)

Query:  16 NFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILN  75
            +PLLG +I++ IP +++ LIR  +   S +TFL ++  WI FD S   FQFV + + L 
Sbjct:  17 KWPLLGALIVLLIPNSKIRLIRSIAFCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLP  76

Query:  76 FELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFST 135
           +  I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F ++E+ ++  F  
Sbjct:  77 YSNINFYIGLDGISLFFVVLTTFLIPICMLVGWSSIQNYKKEYMIAFLVLEAFMIAVFCM 136

Query: 136 IDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETG 195
           +DLLLFY+FFE VLIP+F IIG++GSR RKIRA+YQFFLYTLLGS+ +L+AILLI F+TG
Sbjct: 137 LDLLLFYVFFESVLIPMFLIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILFQTG 196

Query: 196 TTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGIL 255
           TT++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGIL
Sbjct: 197 TTDLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIL 256

Query: 256 LKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHI 315
           LKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTTLRQ+DLKKI+AYSS+AH+
Sbjct: 257 LKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHM 316

Query: 316 GYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPL 375
            +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTR++KYY GL + +P+
Sbjct: 317 NFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLVSTMPI 376

Query: 376 FAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRL 435
           F+ +  FFTLANI LPGTS+FIGEF+IL+G  Q +      +  G+IL A+Y +W YNR+
Sbjct: 377 FSTIFLFFTLANISLPGTSSFIGEFLILVGAFQAAPNVATLAAIGMILGAAYSIWLYNRV 436

Query: 436 IFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIH 481
           +FGNLK  +     D++++EF   +P VI  + MG+YP +FL  +H
Sbjct: 437 VFGNLKPYFIHKFSDLNRREFFMFLPFVIGVVWMGVYPEVFLECMH 482


ref|YP_006234138.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia haitanensis]
gb|AFH57649.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pyropia haitanensis]
(488 aa)

Score: 565 bits (1456), Expect: 1.89523e-158
Length: 483, Idn/Pos/Gap = 279/369/0 (57%/76%/0%)

Query:   8 DSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQF  67
            +LL+W    PL G I+++ IP     LIR  + I++ LTF+ +I LW+ F+     FQF
Sbjct:   4 TNLLLWTALIPLCGVILLLLIPGCYFNLIRNIAFIVAQLTFVCSILLWLCFELKTSLFQF  63

Query:  68 VISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIES 127
           + +        I Y +G+DGISLFFIILT+ LI  C L++WN   +  KE+LI F ++E+
Sbjct:  64 IYTINWFPSYNIYYTIGIDGISLFFIILTTWLITTCILISWNMPNKRVKEYLICFLLLET 123

Query: 128 LLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAI 187
           +L+  F  +D+L FYIFFE VLIP+F IIGI+GSR RKIRA+YQFF+YTL GSLL+L+AI
Sbjct: 124 ILIQVFCVLDVLFFYIFFESVLIPMFLIIGIWGSRERKIRAAYQFFIYTLAGSLLMLLAI 183

Query: 188 LLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG 247
           L+IYF+ GTT+I  L+NV+F  R Q+LLWLAFFAS AVK+PMIPFHIWLPEAHAEAPT+G
Sbjct: 184 LVIYFQHGTTDIQMLWNVNFNIRTQILLWLAFFASLAVKIPMIPFHIWLPEAHAEAPTAG 243

Query: 248 SIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIV 307
           S+ILAG+LLK+GGYGFLRFSLP+FP AS Y++PLIY LS+IA IYASLTT+RQVDLKKI+
Sbjct: 244 SVILAGVLLKMGGYGFLRFSLPMFPEASLYFAPLIYLLSVIAAIYASLTTIRQVDLKKII 303

Query: 308 AYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYS 367
           AYSS++H+G+V LG+FSFN QG+EGS++L+L HG VSSALFLC+G+LYDR+KTR+LKYY 
Sbjct: 304 AYSSVSHMGFVTLGLFSFNSQGIEGSVILMLSHGLVSSALFLCIGILYDRHKTRLLKYYG 363

Query: 368 GLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASY 427
           G    +P+F++L  FFT +NIG PGTS+F+GE +ILIG+ Q S I+   S   +IL A Y
Sbjct: 364 GFVQIMPIFSLLFIFFTFSNIGFPGTSSFVGELLILIGVFQLSPISAFLSAFSMILGAGY 423

Query: 428 CLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
            +W +NR+ FG+LK  Y K  QD+S++EF  L PL +  L MG+YP +FL ++H +   L
Sbjct: 424 SIWLFNRICFGSLKLQYIKNFQDVSRREFYILFPLSVFILWMGVYPEVFLKALHCSSYNL 483

Query: 488 LTH 490
           + +
Sbjct: 484 IAY 486


ref|NP_044801.1| NADH dehydrogenase subunit 4 [Reclinomonas americana]
gb|AAD11916.1| NADH dehydrogenase subunit 4 (mitochondrion) [Reclinomonas americana]
(493 aa)

Score: 565 bits (1455), Expect: 2.60232e-158
Length: 473, Idn/Pos/Gap = 267/365/0 (56%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG  I+  IP  +  LI+  SL  S LTF+++++LWI FD+S   FQFV     +   
Sbjct:  18 PILGVFILFLIPGWKTSLIKQVSLYASLLTFILSLFLWIFFDKSTSKFQFVYEVNWIETL  77

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + LG+DGISLF +ILT+ LI +C L  W + +   KE++I F ++++LL+  F  +D
Sbjct:  78 NIHFSLGIDGISLFLVILTTFLIPLCILTGWESIKHNIKEYMICFLLLDALLIMIFCVLD 137

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           L+LFYIFFE VLIP+F +IG++GSR RK+RA+Y  FLYT  GSLL+LIAI++IYF+ GTT
Sbjct: 138 LVLFYIFFESVLIPMFIVIGVWGSRERKVRAAYMLFLYTFFGSLLMLIAIMVIYFDAGTT 197

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +I  L   +F + +Q LLWLAFF SFA+K+PM+PFH+WLPEAH EAPT+GS++LAG+LLK
Sbjct: 198 DIQVLLTTEFSQERQKLLWLAFFISFAIKIPMVPFHVWLPEAHVEAPTAGSVLLAGVLLK 257

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LGGYG LRFS+P+FP A+ Y++PL+YT+SIIAIIY SLTTLRQ+DLK+I+AYSS+AH+ +
Sbjct: 258 LGGYGILRFSIPMFPEATVYFTPLVYTMSIIAIIYTSLTTLRQIDLKRIIAYSSVAHMNF 317

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QGLEGS+LL+L HG VSSALFLC+GVLYDR+KTR+LKYYSG+   +P+FA
Sbjct: 318 VTIGMFSLNMQGLEGSILLMLSHGIVSSALFLCIGVLYDRHKTRLLKYYSGVVQTMPIFA 377

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            L   FT+ANI LPGTS+F+GEF++LIG   ++     F+T+GIIL A+Y LW YNR+ F
Sbjct: 378 TLFMLFTMANISLPGTSSFVGEFLVLIGAFNSNTTVAFFATTGIILGAAYSLWLYNRVAF 437

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK  Y +F  D++++E +   PLVIL  +MG+YP IFL ++H+++  L+ H
Sbjct: 438 GNLKIEYIQFFYDVTRREMLVFTPLVILVFVMGIYPEIFLDAMHVSVGNLIEH 490


emb|CCO13963.1| NADH dehydrogenase subunit 4 [Bathycoccus prasinos]
(489 aa)

Score: 565 bits (1455), Expect: 2.73592e-158
Length: 483, Idn/Pos/Gap = 273/369/0 (56%/76%/0%)

Query:   8 DSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQF  67
            SLL  I  FP LG ++++ +P +Q  LIR   L IS +TF++++ LW+ FD S   FQF
Sbjct:   2 QSLLSIILLFPALGGLVLLCVPNSQTRLIRILGLTISFITFVLSLLLWVFFDHSTAKFQF  61

Query:  68 VISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIES 127
           V +   L F  + +++G+DGISLFFI+LT+ L+  C L+ W++ ++  KE+ I F  +ES
Sbjct:  62 VNAVDWLPFLNMHFYIGIDGISLFFILLTTFLVPFCLLVGWDSVQKNVKEYFIAFLFLES 121

Query: 128 LLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAI 187
            +L  F  +DLLLFY+FFE VL+P+F IIG++GSR RKIRA+YQFFLYTL+GSL +L+AI
Sbjct: 122 FMLAVFCMLDLLLFYVFFESVLLPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAI 181

Query: 188 LLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG 247
           LLIYF+TGTT++  L+  +F  ++QLLLW AFFASFAVKVPMIP HIWLPEAH EAPTSG
Sbjct: 182 LLIYFQTGTTDLQVLFVSEFSLQRQLLLWFAFFASFAVKVPMIPVHIWLPEAHVEAPTSG 241

Query: 248 SIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIV 307
           S+ILAG+LLKLG YGF+R+S+PLFP AS Y++PLIYTLSII +IYASLTTLRQ+DLKKI+
Sbjct: 242 SVILAGVLLKLGTYGFVRYSIPLFPEASVYFTPLIYTLSIIGVIYASLTTLRQIDLKKII 301

Query: 308 AYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYS 367
           AYSS+AH+G+V LG+FS N+QG+EG+L L+L HGFV+SALFLC+GVLYDR  TR++KYY 
Sbjct: 302 AYSSVAHMGFVTLGLFSLNIQGIEGALFLMLSHGFVASALFLCIGVLYDRTHTRLVKYYG 361

Query: 368 GLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASY 427
           GL   +PLF+V    FT+ N+ LPGTS+F+GEF+IL+G+ QT+     F+ +G+IL  +Y
Sbjct: 362 GLVHVMPLFSVFFLIFTMGNLSLPGTSSFVGEFLILVGVFQTNPFVATFAATGMILGGAY 421

Query: 428 CLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
            +W YNR++FGNLK  +     D++++EF   +P V   L MG YP +FL  +H ++  L
Sbjct: 422 SIWLYNRVVFGNLKPFFIDTFMDVNRREFFIFLPFVFCVLWMGFYPEVFLEPMHTSVANL 481

Query: 488 LTH 490
           + H
Sbjct: 482 VQH 484


gb|AEB40013.1| NADH dehydrogenase subunit 4 [Funaria hygrometrica]
(495 aa)

Score: 564 bits (1454), Expect: 3.39874e-158
Length: 473, Idn/Pos/Gap = 265/366/0 (56%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG II+  IP +++ LIR   L  S +TFL ++  WI FD S   FQFV + + L + 
Sbjct:  19 PLLGSIILFVIPDSRIRLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F + ES ++  F  +D
Sbjct:  79 NINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+F+TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+EGS+LL+L HG VSSALFLCVGVLYDR+KTR++KYY GL + +P+F+
Sbjct: 319 VTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFT AN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR+IF
Sbjct: 379 TIFLFFTSANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIF 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K  + +   D++++E +   P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491


ref|YP_717299.1| nad4 [Ostreococcus tauri]
emb|CAL36421.1| unnamed protein product [Ostreococcus tauri]
(489 aa)

Score: 563 bits (1451), Expect: 6.62536e-158
Length: 474, Idn/Pos/Gap = 273/369/0 (57%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG + ++F P+  +  ++ F+L IS +TF+ ++ LWI FD S   FQFV     L+  
Sbjct:  14 PVLGAVGLLFFPKTAVRQMKLFALNISLVTFVCSLNLWIFFDNSTAKFQFVQHMDWLSVL  73

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            + +++G+DGISLFF+ILT+ L+ VC L++W + +   +EFL+ F ++ES +L  F  +D
Sbjct:  74 NMNFYVGIDGISLFFMILTTFLVPVCLLISWQSVKHLVREFLVAFLLLESFMLAVFCMLD 133

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKIRA+YQFFLYTL+GSL +L+AILLIYF+ GTT
Sbjct: 134 LLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAILLIYFQVGTT 193

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L+ V+F ER+QL LW+AFF SFAVKVPMIPFHIWLPEAH EAPTSGS+ILAGILLK
Sbjct: 194 DLQVLHTVEFSERRQLFLWVAFFLSFAVKVPMIPFHIWLPEAHVEAPTSGSVILAGILLK 253

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+PLFP A+ Y++PLIYT+S+I IIYAS TTLRQ+DLKKI+AYSS+AH+G+
Sbjct: 254 LGTYGFLRFSIPLFPEATIYFTPLIYTMSVIGIIYASFTTLRQIDLKKIIAYSSVAHMGF 313

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V LG+FS N+QG+EG++LL+L HGFV+SALFLC+G+LYDR  TR++KYY GL   +PLFA
Sbjct: 314 VTLGLFSLNMQGVEGAVLLMLSHGFVASALFLCIGILYDRTHTRLIKYYGGLVQTMPLFA 373

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
              F FTL N+ LPGTS+F+GEF+IL+G+ QT+      + +G+IL  +Y +W YNR++F
Sbjct: 374 FFFFIFTLGNLSLPGTSSFVGEFLILVGVFQTNTFIATLAATGMILGGAYSIWLYNRVVF 433

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           GNLK  Y     DI+++EF  L+P V+    MG+YP+IFL S+H ++  +L  I
Sbjct: 434 GNLKPVYINQFADINRREFFILLPFVVCIFWMGIYPSIFLESLHYSVATVLQSI 487


ref|YP_539018.1| NADH dehydrogenase subunit 4 [Physcomitrella patens]
dbj|BAE93089.1| NADH dehydrogenase subunit 4 (mitochondrion) [Physcomitrella patens]
(495 aa)

Score: 561 bits (1446), Expect: 2.3355e-157
Length: 473, Idn/Pos/Gap = 265/365/0 (56%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG II+  IP  ++ LIR   L  S +TFL ++  WI FD S   FQFV + + L + 
Sbjct:  19 PLLGSIILFVIPDPRIRLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I +++G+DGIS FF++LT+ LI +C L+ W++ + Y KE++I F ++ES ++  F  +D
Sbjct:  79 NINFYIGIDGISSFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLILESFMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+F+TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASF+VKVPMIP HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFSVKVPMIPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLXFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+EGS+LL+L HG VSSALFLCVGVLYDR+KTR++KYY GL + +P+F+
Sbjct: 319 VTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR+IF
Sbjct: 379 TIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIF 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K  + +   D++++E +   P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491


gb|ACH78246.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
(495 aa)

Score: 558 bits (1438), Expect: 2.09603e-156
Length: 473, Idn/Pos/Gap = 271/362/0 (57%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDCMHTSVSNLVQH 491


ref|NP_066349.1| NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]
gb|AAG13716.1|AF295546_42 NADH dehydrogenase subunit 4 [Malawimonas jakobiformis]
(486 aa)

Score: 558 bits (1437), Expect: 2.76044e-156
Length: 472, Idn/Pos/Gap = 272/370/2 (57%/78%/0%)

Query:  17 FPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNF  76
           FPL+G I+++F+  N +  IR  +L  + +TF+++I LWILFD +   +QF++  +++ F
Sbjct:  13 FPLIGIILLLFV--NDISAIRKITLNTTIITFILSIVLWILFDNTTSKYQFLLKIELIPF  70

Query:  77 ELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTI 136
             + Y++G+DGIS+FF+ILT+ L+ +C L +WN+   Y +E++ILF ++E+L++N F  I
Sbjct:  71 LNLNYYIGIDGISIFFLILTTFLVPICILASWNSIRHYVREYMILFLLLETLMMNVFCVI 130

Query: 137 DLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGT 196
           D++LFYIFFE VLIP+F IIGI+G+R RKI A++QFFLYTLLGSL +L AIL+IYF TGT
Sbjct: 131 DIILFYIFFESVLIPMFLIIGIWGARERKIHAAFQFFLYTLLGSLFMLFAILIIYFNTGT 190

Query: 197 TNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILL 256
           T+   L   +F   +QLLLWLAFF SFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILL
Sbjct: 191 TDFKVLLVTEFSRNRQLLLWLAFFISFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILL 250

Query: 257 KLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIG 316
           KLG YG LRFSL LFP A+ YY PL+YT+ +IAIIY SLTTLRQ+DLKKI+AYSS+AH+ 
Sbjct: 251 KLGTYGLLRFSLTLFPDANIYYIPLVYTMGVIAIIYTSLTTLRQIDLKKIIAYSSVAHMN 310

Query: 317 YVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLF 376
           +VILG+FS N++ +EGS+LL+L HGFVSSALFLC+GVLYDR+ TRI++YYSG+T  +P+F
Sbjct: 311 FVILGLFSLNIEAIEGSILLMLSHGFVSSALFLCIGVLYDRHHTRIVRYYSGITLTMPIF 370

Query: 377 AVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLI 436
           + L  FFTLANI LP TS+FIGEF+IL+ + Q +    I +++GIIL A+Y +W YNR+ 
Sbjct: 371 STLFLFFTLANISLPTTSSFIGEFLILLAVFQNNTSICILASTGIILGAAYAIWLYNRVA 430

Query: 437 FGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           FGN+  NY     D+  +EF   IP V+L L+MG+YPNIFL  +H++++ LL
Sbjct: 431 FGNININYINPFNDLYLREFAIFIPFVVLILLMGIYPNIFLDYLHLSVINLL 482


ref|YP_004927623.1| NADH dehydrogenase subunit 4 (mitochondrion) [Anomodon rugelii]
gb|AEH99670.1| NADH dehydrogenase subunit 4 [Anomodon rugelii]
(495 aa)

Score: 558 bits (1437), Expect: 2.80689e-156
Length: 473, Idn/Pos/Gap = 264/363/0 (55%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG II+  IP  ++ LIR   L  S +TFL ++  WI FD S   FQFV + + L + 
Sbjct:  19 PLLGSIILFVIPDPRIRLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F + ES ++  F   D
Sbjct:  79 NINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAVFCMPD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+F+TGTT
Sbjct: 139 LLLFYVFLESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+EGS+LL+L HG VSSALFLCVGVLYDR+KTR++KYY GL + +P+F+
Sbjct: 319 VTIGMFSLNIQGIEGSILLMLSHGMVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  F TLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR+IF
Sbjct: 379 TIFLFSTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWPYNRVIF 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K  + +   D++++E +   P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491


dbj|BAD83480.2| NADH dehydrogenase subunit 4 (mitochondrion) [Nicotiana tabacum]
(495 aa)

Score: 556 bits (1434), Expect: 7.45062e-156
Length: 473, Idn/Pos/Gap = 268/362/0 (56%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E +++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFIMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQ FLYTLLGS+ +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI+LK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIVLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNLVQH 491


ref|YP_717159.1| NADH dehydrogenase subunit 4 [Brassica napus]
dbj|BAC98908.1| NADH dehydrogenase subunit 4 [Brassica napus]
(495 aa)

Score: 555 bits (1429), Expect: 2.27909e-155
Length: 473, Idn/Pos/Gap = 270/361/0 (57%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFA FAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFAFFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDCMHTSVSNLVQH 491


sp|P93313.2|NU4M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4
(495 aa)

Score: 552 bits (1422), Expect: 1.59247e-154
Length: 473, Idn/Pos/Gap = 269/360/0 (56%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFSFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDCMHTSVSNLVQH 491


ref|YP_004927652.1| NADH dehydrogenase subunit 4 (mitochondrion) [Treubia lacunosa]
gb|AEH99699.1| NADH dehydrogenase subunit 4 [Treubia lacunosa]
(495 aa)

Score: 551 bits (1421), Expect: 1.91333e-154
Length: 463, Idn/Pos/Gap = 258/362/0 (55%/78%/0%)

Query:  28 IPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDG  87
           IP +++ LIR  +L  S +TFL +++ WI F+     FQFV + + L +  I +++G+DG
Sbjct:  29 IPNSRVRLIRDITLWTSLMTFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDG  88

Query:  88 ISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEG 147
           ISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE 
Sbjct:  89 ISLFFVILTTFLTPICILVGFYSVKSYRKEYMIAFFICESFLIAVFCSLDLLIFYVFFES 148

Query: 148 VLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDF 207
           VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F
Sbjct: 149 VLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEF 208

Query: 208 YERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFS 267
            ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS
Sbjct: 209 SERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFS 268

Query: 268 LPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNV 327
           +P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+
Sbjct: 269 IPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNI 328

Query: 328 QGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLAN 387
           QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL + +P+F+++  FFTLAN
Sbjct: 329 QGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSIIFLFFTLAN 388

Query: 388 IGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKF 447
           + LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++FGN K N+   
Sbjct: 389 MSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILK 448

Query: 448 LQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
             D++++E +  +P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 449 FSDLNRREVLTFLPFIVGIIWMGVYPEVFLECMHTSVSNLVQH 491


ref|YP_002860128.1| NADH dehydrogenase subunit 4 [Micromonas sp. RCC299]
gb|ACO55592.1| NADH dehydrogenase subunit 4 [Micromonas sp. RCC299]
(488 aa)

Score: 550 bits (1417), Expect: 6.10206e-154
Length: 471, Idn/Pos/Gap = 264/358/0 (56%/76%/0%)

Query:  20 LGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELI  79
           +G +II  IP  ++  I+  +L IS + F++   LWI+FD S   FQFV     L F  +
Sbjct:  13 VGALIIACIPSWKVRAIKIIALCISLINFVVASGLWIVFDNSTAKFQFVEHIGWLPFFNM  72

Query:  80 QYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLL 139
             ++G+DGISLFFI+LT+ L+ VC L+ W    ++ KE+ + F ++E+ +L  F  +DLL
Sbjct:  73 NAYIGIDGISLFFIVLTTFLVPVCLLVGWVNISKHVKEYCLAFLILETCMLAVFCMLDLL 132

Query: 140 LFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNI 199
           LFY+FFE VL+P+F IIG++GSR RKIRA+YQFFLYTL+GS+L+L+AILLIYF+ GTT++
Sbjct: 133 LFYVFFESVLLPMFLIIGVWGSRARKIRAAYQFFLYTLVGSVLMLLAILLIYFQVGTTDL 192

Query: 200 NFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLG 259
             L   +F ER+QLLLWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG
Sbjct: 193 QVLLVSEFSERRQLLLWLAFFASFAVKVPMVPLHIWLPEAHVEAPTAGSVILAGILLKLG 252

Query: 260 GYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVI 319
            YGFLRFS+PLFP AS Y++PLIYT+SII I+YASLTTLRQ+DLKKI+AYSS+AH+G+V 
Sbjct: 253 TYGFLRFSIPLFPEASLYFTPLIYTMSIIGIVYASLTTLRQIDLKKIIAYSSVAHMGFVT 312

Query: 320 LGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVL 379
           +G+FS NVQG+EG++LL+L HGFV+SALFLCVG LYDR  TR+++YY GL   +PLF+  
Sbjct: 313 IGLFSLNVQGVEGAILLMLSHGFVASALFLCVGTLYDRTHTRLIQYYGGLVHIMPLFSFF 372

Query: 380 LFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGN 439
              FT+ N+ LPGTS+F+GEF+IL+G  QT+      + +G+IL  +Y +W YNR++FGN
Sbjct: 373 FLVFTMGNLSLPGTSSFVGEFLILVGTFQTNTWIATLAATGMILGGAYSIWLYNRVVFGN 432

Query: 440 LKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           LK  Y     D++++EF   +P V+  L MG YP +FL  +H+++  ++ H
Sbjct: 433 LKPLYISMGSDVNRREFWIFVPFVLAILWMGFYPQVFLDPMHVSVSNVIQH 483


ref|NP_054401.1| NADH dehydrogenase subunit 4 [Marchantia polymorpha]
sp|P26848.2|NU4M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4
gb|AAC09398.1| nad4 [Marchantia polymorpha]
(495 aa)

Score: 550 bits (1417), Expect: 6.63305e-154
Length: 463, Idn/Pos/Gap = 257/361/0 (55%/77%/0%)

Query:  28 IPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDG  87
           IP +++ LIR  ++  S +TFL +++ WI F+     FQFV + + L +  I +++G+DG
Sbjct:  29 IPNSRVRLIRGITIWTSLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDG  88

Query:  88 ISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEG 147
           ISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE 
Sbjct:  89 ISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFES 148

Query: 148 VLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDF 207
           VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F
Sbjct: 149 VLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEF 208

Query: 208 YERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFS 267
            ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS
Sbjct: 209 SERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFS 268

Query: 268 LPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNV 327
           +P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+
Sbjct: 269 IPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNI 328

Query: 328 QGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLAN 387
           QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN
Sbjct: 329 QGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLAN 388

Query: 388 IGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKF 447
           + LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++FGN K N+   
Sbjct: 389 MSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILK 448

Query: 448 LQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
             D++++E +  +P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 449 FSDLNRREVLIFLPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491


ref|NP_064080.2| nad4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
ref|YP_004222318.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
ref|YP_004842124.1| NADH dehydrogenase subunit 4 [Beta macrocarpa]
dbj|BAB91330.1| NADH dehydrogenase subunit 4 [Beta vulgaris]
dbj|BAA99473.2| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris]
emb|CBJ14051.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
emb|CBJ17542.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
emb|CBJ20743.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima]
emb|CBX24931.1| NADH dehydrogenase subunit 4 [Beta macrocarpa]
emb|CBL51988.1| NADH dehydrogenase subunit 4 (mitochondrion) [Beta vulgaris subsp. maritima]
(495 aa)

Score: 550 bits (1416), Expect: 7.27065e-154
Length: 473, Idn/Pos/Gap = 270/363/0 (57%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNLVQH 491


gb|ADG85355.1| NADH dehydrogenase subunit 4 [Silene noctiflora]
(495 aa)

Score: 550 bits (1416), Expect: 8.17155e-154
Length: 473, Idn/Pos/Gap = 271/362/0 (57%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG +I++F+P +++ LIR   L  S +TFL +I LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSMILLFLPNSRIRLIRLIGLSASLITFLYSILLWIQFDPSTAKFQFVESIRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF++LT+ LI +C L+ W     Y KE++I F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVLLTTFLIPICILVGWANIRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+ ILLI  ETGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILLILLETGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L + +F ER+QL LWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLSTEFSERRQLFLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+L+YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLLRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFTLAN+ LPGTS+F+GEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFLFFTLANMSLPGTSSFVGEFLILVGAFQRNSLVATLAAIGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     DI+++E    IP ++  L MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFIHKFSDINRRECFIFIPFLLGVLWMGVYPKVFLDCMHTSVSNLVQH 491


ref|YP_003875493.1| NADH dehydrogenase subunit 4 [Silene latifolia]
gb|ADG85354.1| NADH dehydrogenase subunit 4 [Silene latifolia]
gb|ADK73321.1| NADH dehydrogenase subunit 4 [Silene latifolia]
(495 aa)

Score: 549 bits (1415), Expect: 1.10346e-153
Length: 473, Idn/Pos/Gap = 270/363/0 (57%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREIFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNLVQH 491


gb|ADT62145.1| NADH dehydrogenase subunit 4 [Isoetes engelmannii]
(495 aa)

Score: 549 bits (1414), Expect: 1.3481e-153
Length: 473, Idn/Pos/Gap = 259/362/0 (54%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG II+  IP +++ LIR   L  S +TFL +++ W+ FD S   FQFV + + L   
Sbjct:  19 PLLGSIILFVIPDSRIRLIRSIGLCTSLITFLYSLFFWVRFDNSTAKFQFVETIRWLPDS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + +G+DGISLFF++LT+ LI +C L+ W++ E Y KE++I F + ES+++  F  +D
Sbjct:  79 NINFSIGIDGISLFFVVLTTFLIPICILVGWSSIESYEKEYMIAFLICESIMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIGI+GSR RKI+A+YQFFLYTLLGS+ +L+AILLI+  TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGIWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLIFSGTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L    F ER+Q+LLW+AFFA F+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DVQILLTTGFSERRQILLWIAFFAFFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRF++P+ P A+ Y++PLIYTLS+IAIIY SLTT+RQ+DLKK +AYSS+AH+ +
Sbjct: 259 LGTYGFLRFNIPMCPVATLYFTPLIYTLSVIAIIYTSLTTIRQIDLKKNIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
             +G+FS NVQG+EGS+LL+L HG VSSALFLCVG LYDR++TR++KYY GL + +P+F+
Sbjct: 319 GTIGMFSLNVQGIEGSILLMLSHGLVSSALFLCVGALYDRHRTRLVKYYGGLVSTMPIFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FF LAN+ LPGTS+FIGEF++L+G  + + +  + +  G+IL A+Y LW YNR++F
Sbjct: 379 TIFLFFILANMSLPGTSSFIGEFLVLVGAFERNSLVAVLAALGMILGAAYSLWLYNRVVF 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K N  +   D++++E +  +P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNFKPNSLQKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLECMHTSVGNLVQH 491


ref|YP_003587245.1| NADH dehydrogenase subunit 4 [Citrullus lanatus]
gb|ACV96638.1| NADH dehydrogenase subunit 4 [Citrullus lanatus]
(495 aa)

Score: 546 bits (1406), Expect: 1.1508e-152
Length: 473, Idn/Pos/Gap = 270/361/0 (57%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDYMHTSVSNLVQH 491


gb|ABX82563.1| NADH dehydrogenase subunit 4 [Trebouxia aggregata]
(526 aa)

Score: 545 bits (1404), Expect: 1.996e-152
Length: 479, Idn/Pos/Gap = 269/360/9 (56%/75%/1%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILN-----  75
           G ++++F+P     LIR  +L IS  TFL+++ +WI FD S   FQF+ S  ++      
Sbjct:  44 GALVLLFVPSWNYKLIRSIALYISLATFLLSLCIWIQFDNSTGKFQFMQSFALVEHAVRS 103

Query:  76 ----FELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
               +  + + +G+DGISLFFIIL + LI VC L+ W +   Y KE+ I F ++ESL++ 
Sbjct: 104 AQPEYSSLSFIIGIDGISLFFIILCTFLIPVCILVGWKSVSVYVKEYCIAFLVLESLMIC 163

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            FS +DLLLFY+FFE VLIP+F IIG++GSR RKIRA+YQFFLYTL GS+L+L+AILLIY
Sbjct: 164 FFSVLDLLLFYVFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLAILLIY 223

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  LY   F E +++LLWL FFASFAVKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 224 FQTGTTDLQILYTTAFSETREILLWLCFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVIL 283

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGI+LKLG YGFLR SLPLFPYA  Y++PLIYT+S++AIIY SLTTLRQVDLKKI+AYSS
Sbjct: 284 AGIMLKLGTYGFLRLSLPLFPYACIYFTPLIYTMSVVAIIYTSLTTLRQVDLKKIIAYSS 343

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ ++ +G+FS N QG+EGS++L+L HG VS ALFL VGVLYDR+KTR+L+YY+G   
Sbjct: 344 VAHMNFITIGLFSLNTQGVEGSVMLMLSHGIVSPALFLLVGVLYDRHKTRLLRYYAGCGR 403

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +PLFA++  FFT+AN+ LPGTS+FIGEF++L GL QT+    + +T+G IL A+Y LW 
Sbjct: 404 TMPLFALMFLFFTMANLSLPGTSSFIGEFLVLTGLFQTNSFVAVLATTGTILGAAYALWL 463

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
            NR+I+G  K  Y     D++++EF   +P VI  L MGL P  FL+S+H ++  ++ H
Sbjct: 464 CNRVIYGVGKVYYISSFSDLTRREFFMFLPFVITVLWMGLQPEPFLNSLHSSVGNVVNH 522


ref|YP_004222735.1| NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum]
gb|ADW83107.1| NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum]
(488 aa)

Score: 545 bits (1404), Expect: 2.01272e-152
Length: 482, Idn/Pos/Gap = 278/374/2 (57%/77%/0%)

Query:   8 DSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQF  67
           + L +++   P LG +II FI  N  + I+  SL I  +TF ++++ WI FD S + FQF
Sbjct:   5 NQLFLYLPIIPFLGAVIIFFI--NNDLFIKKLSLFIFFVTFQLSLFFWIFFDNSVYQFQF  62

Query:  68 VISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIES 127
           + S   +  E   Y +G+DGISLFFIILT+ LI +C L +W++ ++  KEF+I F ++ES
Sbjct:  63 LNSINWIPSENFYYTVGIDGISLFFIILTTFLIPICVLASWDSIKKNFKEFVICFLILES 122

Query: 128 LLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAI 187
           +L+ +FS +D+LLFYIFFE +LIP+F IIGI+GSR RKIRA+Y FFLYTL+GSL +L+ I
Sbjct: 123 ILILSFSVLDILLFYIFFESILIPMFLIIGIWGSRERKIRAAYYFFLYTLVGSLFMLLGI 182

Query: 188 LLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG 247
           LLIYFETGTT++  L  + F E++QLLLWLAFFASF+VKVPMIPFHIWLPEAH E+PT+G
Sbjct: 183 LLIYFETGTTDLQTLSFIKFSEKRQLLLWLAFFASFSVKVPMIPFHIWLPEAHVESPTAG 242

Query: 248 SIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIV 307
           S++LAGILLKLG YGFLRFSL LFP+A+ Y++PL++T+ +I I+Y SLTTLRQ+DLKKI+
Sbjct: 243 SLVLAGILLKLGTYGFLRFSLNLFPWATIYFTPLVFTMGVIGIVYGSLTTLRQIDLKKII 302

Query: 308 AYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYS 367
           AYSS+AH+ +V+LGIF+ N+QG+EGS+LL+L HG VS ALFL +GVLYDRYK+RIL YYS
Sbjct: 303 AYSSVAHMNFVVLGIFALNLQGIEGSILLMLSHGIVSPALFLAIGVLYDRYKSRILNYYS 362

Query: 368 GLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASY 427
           GL   +PLFA+   FFTLANI LP TS+F+GEF++L+G  + + IA   +T GIIL ASY
Sbjct: 363 GLVQVMPLFAIFFGFFTLANISLPTTSSFVGEFLVLLGAFRYNTIAAFIATLGIILGASY 422

Query: 428 CLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
            LW YNR+IFGN+K  Y  +  D++++E    IPLV+++L MG+YP  FL+ +H +   L
Sbjct: 423 SLWLYNRVIFGNIKVYYLSYFYDLNRRETFLFIPLVLISLWMGIYPTPFLNCMHSSCGYL 482

Query: 488 LT 489
           L+
Sbjct: 483 LS 484


gb|ABZ79355.1| NADH dehydrogenase subunit 4 [Bambusa oldhamii]
gb|ABZ79357.2| NADH dehydrogenase subunit 4 [Phyllostachys edulis]
(495 aa)

Score: 545 bits (1403), Expect: 2.65072e-152
Length: 473, Idn/Pos/Gap = 267/362/0 (56%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP + + LIR   L +S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSSIRLIRLIGLCVSLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C L+ W+    + KE++I F + E L++  F  +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVFIFLPFLVGVVWMGVYPKVFLDCMHTSVSNLVQH 491


sp|P27572.2|NU4M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4
(495 aa)

Score: 544 bits (1401), Expect: 4.02297e-152
Length: 473, Idn/Pos/Gap = 267/361/0 (56%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP + + LIR   L +S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSSIRLIRLIGLCVSLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C L+ W+    + KE++I F + E L++  F  +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +       G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG+YP +FL  +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVFIFLPFLVGVVWMGVYPKVFLDCMHTSVSNLVQH 491


ref|YP_003587350.1| NADH dehydrogenase subunit 4 [Cucurbita pepo]
gb|ACV96680.1| NADH dehydrogenase subunit 4 [Cucurbita pepo]
(495 aa)

Score: 541 bits (1395), Expect: 1.93104e-151
Length: 473, Idn/Pos/Gap = 268/358/0 (56%/75%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I+++FIP  ++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIVLLFIPNERIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIFS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGIFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKTDFLHKFSDLNGREVFIFIPFLVGVVRMGVHPKVFPDYMHTSVSNLVQH 491


ref|YP_001315113.1| NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus]
gb|ABO15103.1| NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus]
(502 aa)

Score: 541 bits (1394), Expect: 3.21243e-151
Length: 484, Idn/Pos/Gap = 273/373/0 (56%/77%/0%)

Query:   7 HDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQ  66
           + SL++++   PL+G II+ FIP  ++ LIR  +   S +TFL ++ LW+ FD S   FQ
Sbjct:  16 NSSLILFVAFTPLVGAIILFFIPNEKIRLIRSIAFTTSLITFLFSLLLWLEFDYSTAKFQ  75

Query:  67 FVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIE 126
           FV +   L F  I +++GVDGIS+FFIILT+ LI VC L+ W+  + Y K++LI F ++E
Sbjct:  76 FVNNVNWLPFSNINFYIGVDGISIFFIILTTFLIPVCILVGWSTVKNYLKQYLIAFLVLE 135

Query: 127 SLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIA 186
           +L++  F T+DLLLFY+FFE VLIP+F IIGI+GSR RKIRA+YQFFLYTL GS+ +L+A
Sbjct: 136 TLMIFVFCTLDLLLFYLFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVFMLLA 195

Query: 187 ILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTS 246
           IL IYF+TGTT++  LY  +F  ++Q++LWLAFFASFAVKVPM+P HIWLPEAH EAPT+
Sbjct: 196 ILFIYFQTGTTDLQILYTTEFTVQRQIILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTA 255

Query: 247 GSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKI 306
           GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++PLIYT+S+IAIIY SLTTL Q+DLKKI
Sbjct: 256 GSVILAGILLKLGSYGFLRFSIPIFPEATLYFTPLIYTMSVIAIIYTSLTTLSQIDLKKI 315

Query: 307 VAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYY 366
           +AYSS+AH+ +V +G+FS N+QG+EGSLLL+L HG VSSALFLCVG LYDR+KTR+++YY
Sbjct: 316 IAYSSVAHMNFVTIGLFSLNIQGIEGSLLLMLSHGLVSSALFLCVGALYDRHKTRLIQYY 375

Query: 367 SGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSAS 426
            G    +PLF++    FTL N+ LPGTS+F+GEF+IL+G  Q++ + T  + +G++L A+
Sbjct: 376 GGCVQTMPLFSLFFLIFTLGNLSLPGTSSFVGEFLILVGSFQSNTMITTLAATGMVLGAA 435

Query: 427 YCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILR 486
           Y LW YNR+IFG  K N+     D++++E M  +P +I    +G+YP IFL  +HI++  
Sbjct: 436 YSLWLYNRVIFGPFKPNFINRFSDLNRREVMMFLPFIIGIFWIGIYPEIFLRVMHISVSA 495

Query: 487 LLTH 490
           L+ H
Sbjct: 496 LIQH 499


ref|YP_003275955.1| NADH dehydrogenase subunit 4 (mitochondrion) [Pleurozia purpurea]
gb|ACR19339.1| NADH dehydrogenase subunit 4 [Pleurozia purpurea]
(495 aa)

Score: 541 bits (1393), Expect: 3.32146e-151
Length: 462, Idn/Pos/Gap = 253/356/0 (54%/77%/0%)

Query:  29 PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGI  88
           P +++ LIR  ++  S +TFL +++ WI F+     FQFV + + L +  I +++G+DGI
Sbjct:  30 PNSRVRLIRGITIWTSLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGI  89

Query:  89 SLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGV 148
           SLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES  +  F ++DLL+FY+F E V
Sbjct:  90 SLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFVCESFPIAVFCSLDLLIFYVFLESV 149

Query: 149 LIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFY 208
           LIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F 
Sbjct: 150 LIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFS 209

Query: 209 ERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSL 268
           ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+
Sbjct: 210 ERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSI 269

Query: 269 PLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQ 328
           P+FP A+ Y++P IY LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+Q
Sbjct: 270 PMFPEATLYFTPFIYVLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQ 329

Query: 329 GLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANI 388
           G+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+
Sbjct: 330 GIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANM 389

Query: 389 GLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFL 448
            LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++FGN K N+    
Sbjct: 390 SLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKF 449

Query: 449 QDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
            D++++E +  +P +   + MG+YP +FL  +H ++  L+ H
Sbjct: 450 SDLNRREVLIFLPFIAGVIWMGVYPEVFLECMHTSVSNLVQH 491


ref|YP_005090485.1| NADH dehydrogenase subunit 4 (mitochondrion) [Lotus japonicus]
gb|AET62945.1| NADH dehydrogenase subunit 4 (mitochondrion) [Lotus japonicus]
(495 aa)

Score: 539 bits (1389), Expect: 1.09524e-150
Length: 473, Idn/Pos/Gap = 263/353/0 (55%/74%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L + 
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + LG+DG+S FF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINFHLGIDGLSFFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGT 
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTA 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGIL K
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYT S IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTPSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+ L+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSIPLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FF TLAN+ LPGTS+FIGEF+I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFFSTLANMSLPGTSSFIGEFLISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H  +  L+ H
Sbjct: 439 GNLKADFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTYVSNLVQH 491


ref|YP_004935284.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
ref|YP_004935285.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
gb|AEO21071.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
gb|AEO21072.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene conica]
(495 aa)

Score: 537 bits (1384), Expect: 4.16191e-150
Length: 473, Idn/Pos/Gap = 259/358/0 (54%/75%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P++G + ++FIP  ++ LIR   L+ S LTFL ++ L + FD S    QFV S + L +E
Sbjct:  19 PVIGILALLFIPNARIRLIRLIGLLTSLLTFLYSLVLRLQFDPSTAKSQFVESFRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + LG+DGISLFF+ILT+ LI +C L+ W+A     KE++I F + E L++  FS +D
Sbjct:  79 NIHFSLGLDGISLFFVILTTFLIPICILVGWSAMRSSGKEYIIAFLICEFLMIAVFSMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+ FE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+ IL I+ +TGTT
Sbjct: 139 LLLFYVLFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILFIFLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+QL LWL+FFASFAVKVPM+P HIWLPEAH EAPT+GS+ LAGILLK
Sbjct: 199 DLQILLTTEFSERRQLFLWLSFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVFLAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+PLFP A+ +++P IY+LS +AIIY SLTTLRQVDLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPLFPEATLFFTPFIYSLSALAIIYTSLTTLRQVDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS++ +L HG VSSALFLCVG+LYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGLFSLNIQGIGGSIIPMLSHGLVSSALFLCVGLLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           ++  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G++L A+Y LW YNRL+ 
Sbjct: 379 LIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAAIGMVLGAAYSLWLYNRLVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D +++EF   +P ++  + MG++P +FL  IH ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDPNRREFCIFLPFLVGVVRMGVHPKVFLDCIHTSVSNLVQH 491


ref|YP_005090463.1| NADH dehydrogenase subunit 4 (mitochondrion) [Millettia pinnata]
gb|AET62923.1| NADH dehydrogenase subunit 4 (mitochondrion) [Millettia pinnata]
(495 aa)

Score: 537 bits (1383), Expect: 5.39046e-150
Length: 473, Idn/Pos/Gap = 262/353/0 (55%/74%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II++FIP +++ LIR   L  S +TFL ++ LWI FD S   FQFV S + L +E
Sbjct:  19 PVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I   LG+DG+S FF+ILT+ LI +C L+ W+    Y KE++I F + E L++  F  +D
Sbjct:  79 NINLNLGIDGLSFFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI F+TGT 
Sbjct: 139 LLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILFQTGTA 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFA+FAVKVPM+P HIWLPEAH EAPT+GS+ILAGIL K
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFAAFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYT S IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTPSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+ L+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSIPLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FF TLAN+ LPGTS+FIGEF+I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFFSTLANMSLPGTSSFIGEFLISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    IP ++  + MG+YP +FL  +H  +  L+ H
Sbjct: 439 GNLKADFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTYVSNLVQH 491


ref|NP_042247.1| NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii]
sp|Q37617.1|NU4M_PROWI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4
gb|AAD12635.1| NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii]
(523 aa)

Score: 535 bits (1379), Expect: 1.38388e-149
Length: 500, Idn/Pos/Gap = 282/368/15 (56%/73%/3%)

Query:   4 SFFHDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYF  63
           SFF  S +  +   PLLG I ++F+P  +   IR  +L  S LTFLI++ LWI FD S  
Sbjct:  21 SFFIMSYIEMVLAIPLLGAIALLFVPSWKTQTIRNIALNSSLLTFLISLLLWIEFDSSSA  80

Query:  64 YFQF---VISKKILN------------FELIQYFLGVDGISLFFIILTSLLIFVCFLLNW 108
            FQF   V S  + +            F  + + LGVDGISLFFIILT+LL+ +C L++W
Sbjct:  81 LFQFTDGVCSPNVYSDVTLAKAASSSSFSALNFALGVDGISLFFIILTTLLVPICILVSW 140

Query: 109 NANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRA 168
           N  E Y KE+ I F ++E+L+L  FS +DLLLFYIFFE VLIP+F IIG++GSR RKIRA
Sbjct: 141 NNIEVYVKEYCIAFLVLETLMLTVFSVLDLLLFYIFFESVLIPMFIIIGVWGSRERKIRA 200

Query: 169 SYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVP 228
           +YQFFLYTL GS+L+L+AILLIYF+TGT +I  LY  DF E +Q +LWLAFFASFAVKVP
Sbjct: 201 AYQFFLYTLFGSVLMLLAILLIYFQTGTLDIEMLYLSDFSETRQCILWLAFFASFAVKVP 260

Query: 229 MIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSII 288
           M+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+PLFPYA  Y++PLIYT+S+I
Sbjct: 261 MVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPLFPYACIYFTPLIYTMSVI 320

Query: 289 AIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALF 348
           AI+Y S TT+RQ+DLKKI+AYSS+AH+ +V +G+FS N QG+EGS+LL++ HG VS ALF
Sbjct: 321 AIVYTSCTTIRQIDLKKIIAYSSVAHMNFVTIGLFSQNTQGIEGSILLMISHGLVSPALF 380

Query: 349 LCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQ 408
           LCVGVLYDR+KTR+L+YYSG    +P+FA+L  FFT+ANI LPGTS+F GEF++ IG  Q
Sbjct: 381 LCVGVLYDRHKTRLLRYYSGCGQTMPIFALLFVFFTMANISLPGTSSFPGEFLVFIGSYQ 440

Query: 409 TSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLI 468
            +      + +G++L A+Y LW  NRLI+G  K ++     D++++EF    PL+   L 
Sbjct: 441 NNSFVAFCAATGMVLGAAYALWLCNRLIYGVSKPDFINTWSDVNRREFFMFAPLIAGILW 500

Query: 469 MGLYPNIFLHSIHITILRLL 488
           +G+YP  FL ++H + + LL
Sbjct: 501 IGVYPEPFLDAMHCSCIYLL 520


gb|AEY83676.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Treubia lacunosa]
(437 aa)

Score: 534 bits (1376), Expect: 3.49399e-149
Length: 435, Idn/Pos/Gap = 249/345/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLMTFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYRKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+++  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLTFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEY83677.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Treubia pygmaea]
(437 aa)

Score: 534 bits (1375), Expect: 4.30441e-149
Length: 435, Idn/Pos/Gap = 249/345/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLMTFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYRKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+++  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSIIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLTFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGIIWMGVYPEVFLE 436


gb|AEY83682.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Corsinia coriandra]
gb|AEY83684.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Monosolenium tenerum]
(437 aa)

Score: 533 bits (1374), Expect: 6.64267e-149
Length: 435, Idn/Pos/Gap = 250/344/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  L MG+YP +FL 
Sbjct: 422 VGVLWMGVYPEVFLE 436


gb|AEY83688.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Ricciocarpos natans]
(437 aa)

Score: 533 bits (1372), Expect: 9.83227e-149
Length: 435, Idn/Pos/Gap = 249/344/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVMWMGVYPEVFLE 436


gb|AEY83680.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Bucegia romanica]
(437 aa)

Score: 533 bits (1372), Expect: 1.12365e-148
Length: 435, Idn/Pos/Gap = 249/344/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGIYPEVFLE 436


gb|AEY83687.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Riccia breidleri]
(437 aa)

Score: 532 bits (1371), Expect: 1.30574e-148
Length: 435, Idn/Pos/Gap = 249/344/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEY83690.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Sphaerocarpos donnellii]
(436 aa)

Score: 532 bits (1371), Expect: 1.32772e-148
Length: 435, Idn/Pos/Gap = 249/344/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   1 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  60

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  61 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 120

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 121 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 180

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 181 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 240

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 241 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 300

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 301 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 360

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 361 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 420

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 421 VGVIWMGVYPEVFLE 435


ref|YP_665717.1| NADH dehydrogenase subunit 4 [Mesostigma viride]
gb|AAL36756.1|AF353999_36 NADH dehydrogenase subunit 4 [Mesostigma viride]
(484 aa)

Score: 532 bits (1370), Expect: 1.67713e-148
Length: 485, Idn/Pos/Gap = 264/362/5 (54%/74%/1%)

Query:   7 HDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQ  66
           +  LL+++  FP+LG I + FIP +++  IR  +   S +T+L++++LW+ F      FQ
Sbjct:   2 NSKLLLFVWLFPILGAIFLSFIPESKIRWIRLGAFWFSCITWLVSLFLWVGFQNLTADFQ  61

Query:  67 FVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIE 126
           F+    I  F    +F+GVDGISLFFI+LT+ LI VC L++W+    Y K + I F  +E
Sbjct:  62 FLQKIDIFPFT---FFVGVDGISLFFILLTTFLIPVCLLVSWSNIHHYRKAYFIAFLAME 118

Query: 127 SLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIA 186
           SLL++ F  +DLLLFYIFFE VLIP+F IIG++GSR RKIRA+YQFF+YTL GS+ +L+ 
Sbjct: 119 SLLISVFCLLDLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVFMLLG 178

Query: 187 ILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTS 246
           IL ++FE GTT+   L   +  E+ QL+ WLAFFASFAVKVPM+P HIWLPEAH EAPT+
Sbjct: 179 ILFLHFEIGTTDFLVLQTTEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHVEAPTA 238

Query: 247 GSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKI 306
           GS++LAGILLKLG YG LRFS+ LFP AS Y++PL+YT+S+IAI+Y SLTTLRQ+DLKKI
Sbjct: 239 GSVLLAGILLKLGTYGLLRFSITLFPMASIYFTPLVYTMSVIAILYTSLTTLRQIDLKKI 298

Query: 307 VAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYY 366
           +AYSS+AH+ +V +G+FS NVQG+EGS+ L+L HG VSSALFLCVGVLY+R+KTR+LKYY
Sbjct: 299 IAYSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLVSSALFLCVGVLYERHKTRLLKYY 358

Query: 367 SGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSAS 426
            G    +PLFA+    FTLA +  PGTS+F+GEF+IL+G  Q ++   I ++ G++L A+
Sbjct: 359 GGSVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQNNISTAILASIGMVLGAA 418

Query: 427 YCLWFYNRLIFGNLKENYFKFLQ--DISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
           Y +W YNR++FGNLK +Y K  Q  D++++E   + P VI  + MG+YP+IFL+ +H ++
Sbjct: 419 YSIWLYNRVVFGNLKSHYSKTFQWSDLNRREVAIMTPFVIGIIFMGIYPDIFLNPMHASV 478

Query: 485 LRLLT 489
             LL 
Sbjct: 479 SHLLN 483


gb|AEY83679.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Asterella blumeana]
(437 aa)

Score: 532 bits (1370), Expect: 1.73405e-148
Length: 435, Idn/Pos/Gap = 249/344/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TG+T++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGSTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  L MG+YP +FL 
Sbjct: 422 VGVLWMGVYPEVFLE 436


gb|AEY83681.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Conocephalum conicum]
(434 aa)

Score: 531 bits (1369), Expect: 2.1185e-148
Length: 433, Idn/Pos/Gap = 248/343/0 (57%/79%/0%)

Query:  46 LTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFL 105
           +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C L
Sbjct:   1 ITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPICIL  60

Query: 106 LNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRK 165
           + + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR RK
Sbjct:  61 VGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRK 120

Query: 166 IRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAV 225
           I+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF+V
Sbjct: 121 IKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASFSV 180

Query: 226 KVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTL 285
           KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IYTL
Sbjct: 181 KVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTL 240

Query: 286 SIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSS 345
           S+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG VSS
Sbjct: 241 SVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSS 300

Query: 346 ALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIG 405
           ALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G
Sbjct: 301 ALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVG 360

Query: 406 LIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVIL 465
             Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P ++ 
Sbjct: 361 AFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVG 420

Query: 466 TLIMGLYPNIFLH 478
            + MG+YP +FL 
Sbjct: 421 VIWMGVYPEVFLE 433


gb|AEY83678.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Blasia pusilla]
(437 aa)

Score: 531 bits (1369), Expect: 2.42107e-148
Length: 435, Idn/Pos/Gap = 249/343/0 (57%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SFITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E    +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVXIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEY83685.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Oxymitra incrassata]
(437 aa)

Score: 530 bits (1365), Expect: 6.0619e-148
Length: 435, Idn/Pos/Gap = 248/343/0 (57%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F II ++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIISVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEY83697.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Radula complanata]
(437 aa)

Score: 529 bits (1362), Expect: 1.3281e-147
Length: 435, Idn/Pos/Gap = 248/342/0 (57%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILPTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


ref|YP_004935300.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene noctiflora]
gb|AEM46205.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene noctiflora]
(495 aa)

Score: 527 bits (1357), Expect: 5.21806e-147
Length: 473, Idn/Pos/Gap = 260/352/0 (54%/74%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG + ++F+P +++  IR   L  S +TFL +  LWI FD S    QFV S + L +E
Sbjct:  19 PVLGSMTLLFLPNSRIRSIRLIGLSASLITFLYSTLLWIQFDPSTAKSQFVESIRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF++LT+ LI +C L+ W     Y KE++I   + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVLLTTFLIPICILVGWANIRSYGKEYIIASLICEFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+  E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+ ILLI  ETGTT
Sbjct: 139 LLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGILLILLETGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L + +F ER+QL LWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLSTEFSERRQLFLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG VSSALFLCVGVLYDR+KTR+L+YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILSMLSHGLVSSALFLCVGVLYDRHKTRLLRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFTLAN+ LPGTS+F+GEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFLFFTLANMSLPGTSSFVGEFLILVGAFQRNSLVATLAAIGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D +++E    IP ++  L MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFIHKFSDTNRRECFIFIPFLLGVLWMGVHPKVFPDCMHTSVSNLVQH 491


gb|AEY83693.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Lejeunea cavifolia]
(437 aa)

Score: 527 bits (1357), Expect: 6.11446e-147
Length: 435, Idn/Pos/Gap = 247/341/0 (56%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILPTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 VLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGE +IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGELLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


gb|AEY83711.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Scapania nemorea]
(437 aa)

Score: 526 bits (1356), Expect: 7.91938e-147
Length: 435, Idn/Pos/Gap = 248/341/0 (57%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILSISFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSLILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


ref|YP_006234390.1| nad4 gene product (mitochondrion) [Huperzia squarrosa]
gb|AEV55723.1| NADH dehydrogenase subunit 4 (mitochondrion) [Huperzia squarrosa]
(495 aa)

Score: 526 bits (1355), Expect: 9.27984e-147
Length: 473, Idn/Pos/Gap = 252/350/0 (53%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG III  +P +++ LI+   L  S +TFL  +  W+ FD S   FQFV + + L   
Sbjct:  19 PLLGSIIIFALPDSRIRLIQSIGLCTSLITFLYPLIFWVRFDNSTAKFQFVQTIRWLPDS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + +G+DGIS FF++LT+ LI +C  + W + + Y KE+ I F + ES+++  F  +D
Sbjct:  79 NINFSIGIDGISPFFVVLTTFLIPICISVGWYSIKNYKKEYTIAFPIRESIMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLL Y+F E VLIP+F IIGI+GSR RKI+A+YQFFLYTLLGS+ +L+AILLI+F+TGTT
Sbjct: 139 LLLSYVFPESVLIPMFIIIGIWGSRQRKIQAAYQFFLYTLLGSVFMLLAILLIFFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+I AGIL K
Sbjct: 199 DVQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVISAGILSK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+ P A+ Y++P IYTLS+IAIIY S TT+RQ+DLKK +AYSS+AH+ +
Sbjct: 259 LGTHGFLRFSIPMCPVATLYFTPFIYTLSVIAIIYTSSTTIRQIDLKKNIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
             +G+FS NVQG+EGS+ L+L HG V SALFLCVG LYDR+KTR++KYY GL + +P+F+
Sbjct: 319 GTIGMFSLNVQGIEGSISLMLSHGPVPSALFLCVGALYDRHKTRLVKYYGGLVSTMPIFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++F
Sbjct: 379 TISLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVF 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K N+ +   D  ++E +  +P ++  + MG+YP +F   +H ++  L+ H
Sbjct: 439 GNFKPNFLQKFSDSDRREVLIFLPFIVGVIWMGVYPEVFPECMHTSVSNLVQH 491


gb|ADU04612.1| NADH dehydrogenase subunit 4 (mitochondrion) [Mesostigma viride]
(487 aa)

Score: 526 bits (1354), Expect: 1.0874e-146
Length: 488, Idn/Pos/Gap = 263/362/8 (53%/74%/1%)

Query:   7 HDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQ  66
           +  LL+++  FP++G I + FIP +++  IR  +   S +T+L++++LW+ F  S   FQ
Sbjct:   2 NSKLLLFVWLFPIVGAIFLSFIPESKIRWIRLGAFWFSCITWLVSLFLWVGFQNSTADFQ  61

Query:  67 FVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIE 126
           F+    I  F    +F+GVDGISLFFI+LT+ LI VC L++W+    Y K + I F   E
Sbjct:  62 FLQKIDIFPFT---FFVGVDGISLFFILLTTFLIPVCLLVSWSNIHHYRKAYFIAFLARE 118

Query: 127 SLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIA 186
           SLL++ F  +DLLLFYIFFE VLIP+F IIG++GSR RKIRA+YQFF+YTL GS+ +L+ 
Sbjct: 119 SLLISVFCLLDLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVFMLLG 178

Query: 187 ILLIYFETGTTN---INFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEA 243
           IL ++FE GTT+   +      +  E+ QL+ WLAFFASFAVKVPM+P HIWLPEAH EA
Sbjct: 179 ILFLHFEIGTTDFLVLQAWAPTEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHVEA 238

Query: 244 PTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDL 303
           PT+GS++LAGILLKLG YG LRFS+ LFP AS Y++PL+YT+S+IAI+Y SLTTLRQ+DL
Sbjct: 239 PTAGSVLLAGILLKLGTYGLLRFSITLFPMASIYFTPLVYTMSVIAILYTSLTTLRQIDL 298

Query: 304 KKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRIL 363
           KKI+AYSS+AH+ +V +G+FS NVQG+EGS+ L+L HG VSSALFLCVGVLY+R+KTR+L
Sbjct: 299 KKIIAYSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLVSSALFLCVGVLYERHKTRLL 358

Query: 364 KYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIIL 423
           KYY G    +PLFA+    FTLA +  PGTS+F+GEF+IL+G  Q ++   I ++ G++L
Sbjct: 359 KYYGGSVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQNNISTAILASIGMVL 418

Query: 424 SASYCLWFYNRLIFGNLKENYFKFLQ--DISKKEFMALIPLVILTLIMGLYPNIFLHSIH 481
            A+Y +W YNR++FG+LK +Y K  Q  D++++E   + P VI  L MG+YP+IFL+ +H
Sbjct: 419 GAAYSIWLYNRVVFGHLKSHYSKTFQWSDLNRREVAIMTPFVIGILFMGIYPDIFLNPMH 478

Query: 482 ITILRLLT 489
            ++  LL 
Sbjct: 479 ASVSHLLN 486


gb|AEY83705.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Herbertus sendtneri]
(436 aa)

Score: 525 bits (1352), Expect: 1.87037e-146
Length: 436, Idn/Pos/Gap = 247/341/0 (56%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   1 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  60

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  61 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 120

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 121 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 180

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 181 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 240

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 241 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPV 300

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFT AN+ LPGTS+FIGEF+IL
Sbjct: 301 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTPANMSLPGTSSFIGEFLIL 360

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 361 VGAFQRNSLVASLAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 420

Query: 464 ILTLIMGLYPNIFLHS 479
              + MG+YP +FL  
Sbjct: 421 AGVIWMGVYPEVFLEG 436


gb|AAA75278.1| NADH dehydrogenase subunit 4 [Lactuca sativa]
(495 aa)

Score: 525 bits (1352), Expect: 1.91777e-146
Length: 473, Idn/Pos/Gap = 259/348/0 (54%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL +  L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    + E L++  F  +D
Sbjct:  79 NIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E VLIP+F IIG++GSR RKI+A+YQ FLYTLLGS+ +L+AILLI F+TGTT
Sbjct: 139 PLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLY R+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYVRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++  E    IP ++  + MG+YP +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDLNGTEVFIFIPFLVGVVWMGVYPKVFPDCMHTSVSNLVQH 491


gb|AEX37496.1| NADH dehydrogenase subunit 4 (mitochondrion) [Gracilariopsis lemaneiformis]
(491 aa)

Score: 523 bits (1347), Expect: 7.41016e-146
Length: 474, Idn/Pos/Gap = 278/367/0 (58%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G +I+  IP  +    R  +L  + +TFL ++ LWI FD     FQF  +       
Sbjct:  17 PLVGLLILFVIPATKESFCRLVALNTACITFLFSLILWIQFDSHTSLFQFSATFDWFPSA  76

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            + Y LG+DGIS+FFI+LT+LL  +C L++W++ +   KE+LI F ++E  L+  FS +D
Sbjct:  77 NLYYTLGIDGISMFFILLTTLLTIICILVSWSSVKFLIKEYLICFLLLEFFLIQVFSVLD 136

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LL FYIFFE VLIP+F I+GI+GSR RKIRA+YQFFLYTL+GSLL+LIA+L IYF+ G+T
Sbjct: 137 LLWFYIFFESVLIPMFLIVGIWGSRERKIRAAYQFFLYTLVGSLLMLIALLTIYFQVGST 196

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L++ +F E KQ++ WLAFF+SFAVK+PMIPFHIWLPEAHAEAPT+GS+ILAGILLK
Sbjct: 197 DLQILWHYNFTEIKQIIFWLAFFSSFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLK 256

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFS+PLFP A  Y++PLI+TLSIIAI+YASLTTLRQVDLKKI+AYSS++H+G+
Sbjct: 257 MGGYGFLRFSIPLFPEACIYFTPLIFTLSIIAILYASLTTLRQVDLKKIIAYSSVSHMGF 316

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIFS N+ G+EGS+LL+L HG VSSALFLC+G+LYDR+KTRILKYYSGL   +PLF 
Sbjct: 317 VTIGIFSLNLHGIEGSILLMLSHGLVSSALFLCIGILYDRHKTRILKYYSGLMQVMPLFG 376

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           +   FFT AN+G PGTS+FIGE ++LIG  Q + I T F++ G+IL A+Y +W +NR+ F
Sbjct: 377 IFFLFFTFANLGFPGTSSFIGELLVLIGAFQLNRILTFFASIGMILGAAYSIWLFNRISF 436

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           G LK  YF F QDIS++EF  L+PL +L L MG+YP  FL  +H ++L L+  +
Sbjct: 437 GTLKTQYFSFFQDISRREFWILLPLTLLILWMGIYPISFLSEMHFSVLSLIEQL 490


gb|AEY83700.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Blepharostoma trichophyllum]
(437 aa)

Score: 523 bits (1346), Expect: 1.08772e-145
Length: 435, Idn/Pos/Gap = 245/340/0 (56%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+    ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFIRESFLIAVSCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILSIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+  HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMSSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G++L A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMVLGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


gb|AEY83692.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Frullania tamarisci]
(430 aa)

Score: 522 bits (1345), Expect: 1.39709e-145
Length: 428, Idn/Pos/Gap = 244/336/0 (57%/78%/0%)

Query:  51 TIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNA 110
           +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C L+ + +
Sbjct:   2 SLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYS  61

Query: 111 NEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASY 170
            + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+Y
Sbjct:  62 VKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAY 121

Query: 171 QFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMI 230
           QFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+
Sbjct: 122 QFFLYTLMGSLFMLLAILFIFFQTGTTDLQILPTTEFSERRQILLWIAFFASFSVKVPMV 181

Query: 231 PFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAI 290
           P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY LS+IAI
Sbjct: 182 PVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAI 241

Query: 291 IYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLC 350
           IY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLC
Sbjct: 242 IYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLC 301

Query: 351 VGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTS 410
           VG LYDR+KTRI+KYY GL + +P+F+ +  FFTLANI LPGTS+FIGEF+I +G  Q +
Sbjct: 302 VGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANISLPGTSSFIGEFLIFVGAFQRN 361

Query: 411 VIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMG 470
            +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +   + MG
Sbjct: 362 SLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFIAGVIWMG 421

Query: 471 LYPNIFLH 478
           +YP +FL 
Sbjct: 422 VYPEVFLE 429


gb|AEY83703.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Gymnomitrion concinnatum]
(437 aa)

Score: 522 bits (1344), Expect: 1.6371e-145
Length: 436, Idn/Pos/Gap = 245/340/0 (56%/77%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ESLL+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESLLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+A+SS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAHSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSAL  CVG LYDR+KTRI+KYY GL + +P+F  +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALLSCVGALYDRHKTRIVKYYGGLVSTMPIFCTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLHS 479
              + MG+YP +F+  
Sbjct: 422 AGVIWMGVYPEVFVEC 437


ref|YP_004062169.1| nad4 gene product (mitochondrion) [Gracilariophila oryzoides]
gb|ADR03185.1| NADH dehydrogenase subunit 4 (mitochondrion) [Gracilariophila oryzoides]
(491 aa)

Score: 521 bits (1343), Expect: 2.30485e-145
Length: 475, Idn/Pos/Gap = 279/366/0 (58%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G II+  IP  +  L R  +L  + +TFL ++ LWI FD     FQF  +   L   
Sbjct:  17 PLVGLIILFIIPSTKESLCRLIALNTACVTFLFSLVLWIQFDSHTSLFQFSETFDWLPSI  76

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            + Y LG+DGISLFFI+LT+LL  +C L++W++ +   KE+LI F ++E  L+  FS +D
Sbjct:  77 NLYYTLGIDGISLFFILLTTLLTIICILVSWSSIKFLVKEYLICFLLLEFFLIQVFSVLD 136

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LL FYIFFE VLIP+F I+GI+GSR RKIRA+YQFFLYTL+GSLL+LIA+L IYF+ G+T
Sbjct: 137 LLWFYIFFESVLIPMFLIVGIWGSRERKIRAAYQFFLYTLVGSLLMLIALLTIYFQVGST 196

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  +   +F E KQ++ WLAFFASFAVK+PMIPFHIWLPEAHAEAPT+GS+ILAGILLK
Sbjct: 197 DLQLIGYHNFSEIKQIIFWLAFFASFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLK 256

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFS+PL P A  Y++PL++TLSIIAI+YASLTTLRQVDLKKI+AYSS++H+G+
Sbjct: 257 MGGYGFLRFSIPLLPEACIYFTPLVFTLSIIAILYASLTTLRQVDLKKIIAYSSVSHMGF 316

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIFS N+ G+EGS+LL+L HG VSSALFLCVG+LYDR+KTRILKYYSGL   +P+F 
Sbjct: 317 VTIGIFSLNLHGIEGSILLMLSHGLVSSALFLCVGILYDRHKTRILKYYSGLMQVMPIFG 376

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           V   FFT AN+G PGTS+FIGE ++L+G  Q + I   F++ G+IL ASY +W +NR+ F
Sbjct: 377 VFFLFFTFANLGFPGTSSFIGELLVLVGAFQLNRILAFFASIGMILGASYSIWLFNRISF 436

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHII 492
           G LK +YFK  QD+S++EF  L+PL  L L MG+YP  FL  +H ++L L+  ++
Sbjct: 437 GTLKIHYFKLFQDVSRREFWILLPLTFLILWMGIYPISFLAEMHFSVLGLIEQLV 491


gb|AEY83724.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Andreaea nivalis]
(418 aa)

Score: 521 bits (1342), Expect: 3.13847e-145
Length: 416, Idn/Pos/Gap = 241/332/0 (57%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF+ILT+LLI +  L+ W++ + Y KE++I F + ES ++ 
Sbjct:   3 RWLPYSNINFYIGIDGISLFFVILTTLLIPIRILVGWSSIKSYKKEYMIAFLICESFMIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F  +DLLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+
Sbjct:  63 VFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSAIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVGVLYDR+KTR++KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           YNR+IFGN K  + +   D++++E +  +P ++  + MG+YP +FL  +H ++  L
Sbjct: 363 YNRVIFGNFKPKFLQKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLECMHTSVSNL 418


gb|AEY83683.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Monoclea gottschei]
(437 aa)

Score: 521 bits (1341), Expect: 3.58671e-145
Length: 435, Idn/Pos/Gap = 250/345/0 (57%/79%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ + FFFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFFFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEY83712.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Trichocolea tomentella]
(437 aa)

Score: 521 bits (1341), Expect: 3.64707e-145
Length: 436, Idn/Pos/Gap = 248/341/2 (56%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++  I F+     FQFV + + L +  I +++G+DGISLFF+I T+ L  +C
Sbjct:   2 SLITFLYSLFFRIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVISTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ +++ E Y KE++I FF+ ES  +  F  +DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFHSVESYKKEYMIAFFICESFPIAVFCPLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGIL KLG YGFLRFS+P+FP A+ Y +P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEATLYSTPSIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYS +AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENY-FKFLQDISKKEFMALIPL 462
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+ FKF  D++++E +  +PL
Sbjct: 362 VGAFQRNSLVAALAAPGMILGAAYSLWLYNRVVFGNFKPNFIFKF-SDLNRREVLIFLPL 420

Query: 463 VILTLIMGLYPNIFLH 478
           ++  + MG+YP +FL 
Sbjct: 421 IVGVIWMGVYPEVFLE 436


emb|CAC39486.1| NADH dehydrogenase subunit 4 [Lunularia cruciata]
(418 aa)

Score: 520 bits (1339), Expect: 6.37864e-145
Length: 416, Idn/Pos/Gap = 240/331/0 (57%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+ 
Sbjct:   3 RWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+
Sbjct:  63 VFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F  +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPIFPTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           YNR++FGN K N+     D++++E +  +P ++  + MG+YP +FL  +H ++  L
Sbjct: 363 YNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLECMHTSVSNL 418


ref|YP_004062193.1| nad4 gene product (mitochondrion) [Gracilariopsis andersonii]
gb|ADR03209.1| NADH dehydrogenase subunit 4 (mitochondrion) [Gracilariopsis andersonii]
(491 aa)

Score: 520 bits (1339), Expect: 6.93369e-145
Length: 475, Idn/Pos/Gap = 276/365/0 (58%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G +I+  IP  +  L R  +L  S +TFL ++ LWI FD     FQF ++       
Sbjct:  17 PLVGLVILFIIPATKESLCRLIALNTSCVTFLFSLILWIQFDSHTSLFQFSVTFDWFPSI  76

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            + Y LG+DGISLFFI+LT+LL  +C L++W++ +   KE+LI F ++E  L+  FS +D
Sbjct:  77 NLYYTLGIDGISLFFILLTTLLTIICILVSWSSVKFLVKEYLICFLLLEFFLIQVFSVLD 136

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LL FYIFFE VLIP+F I+GI+GSR RKIRA+YQFFLYTL+GSLL+LIA+L IYF+ G+T
Sbjct: 137 LLWFYIFFESVLIPMFLIVGIWGSRERKIRAAYQFFLYTLVGSLLMLIALLTIYFQVGST 196

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  +   +F E KQ++ WLAFFASFAVK+PMIPFHIWL EAHAEAPT+GS+ILAGILLK
Sbjct: 197 DLQLIGYYNFSEIKQIIFWLAFFASFAVKIPMIPFHIWLHEAHAEAPTAGSVILAGILLK 256

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFS+PLFP A  Y++PL++TLSIIAI+YASLTTLRQVDLKKI+AYSS++H+G+
Sbjct: 257 MGGYGFLRFSIPLFPEACIYFTPLVFTLSIIAILYASLTTLRQVDLKKIIAYSSVSHMGF 316

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIFS N+ G+EGS+LL+L HG VSSALFLCVG+LYDR+KTRILKYYSGL   +P+F 
Sbjct: 317 VTIGIFSLNLHGIEGSILLMLSHGLVSSALFLCVGILYDRHKTRILKYYSGLMQVMPIFG 376

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           V   FFT AN+G PGTS+FIGE ++LIG  Q + I T F++ G+++ A+Y +W +NR+ F
Sbjct: 377 VFFLFFTFANLGFPGTSSFIGELLVLIGAFQLNRILTFFASIGMVMGAAYSIWLFNRISF 436

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHII 492
           G LK  YF   QD+S++EF  L+PL  + L MG+YP  FL  +H T+L L+  ++
Sbjct: 437 GTLKIQYFGLFQDVSRREFWILLPLTFIILWMGVYPISFLSEMHFTVLSLIEQLV 491


emb|CAC39487.1| NADH dehydrogenase subunit 4 [Riccia fluitans]
(418 aa)

Score: 520 bits (1339), Expect: 7.41231e-145
Length: 416, Idn/Pos/Gap = 240/332/0 (57%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+ 
Sbjct:   3 RWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+
Sbjct:  63 VFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPIFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           YNR++FGN K N+     D++++E +  +P ++  + MG+YP +FL  +H ++  L
Sbjct: 363 YNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLECMHTSVSNL 418


gb|AFI44329.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
(495 aa)

Score: 519 bits (1336), Expect: 1.57066e-144
Length: 473, Idn/Pos/Gap = 259/350/0 (54%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP +++  IR   L  S +TFL +  L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSRIRSIRLIGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+  E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK  +     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPYFLHKFSDPNGREIFIFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQH 491


gb|AEY83704.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Harpanthus flotovianus]
(437 aa)

Score: 518 bits (1335), Expect: 1.98401e-144
Length: 431, Idn/Pos/Gap = 245/336/0 (56%/77%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+   + + Y KE++I F + ESLL+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGLYSVKSYKKEYMIAFLICESLLIAVFRSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AI  I F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAISFISFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHLNFVTIGMFSLNIQGIEGSILLMLSHGPV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPN 474
              + MG+YP 
Sbjct: 422 AGVIWMGVYPE 432


gb|AEY83699.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Anthelia julacea]
(437 aa)

Score: 518 bits (1335), Expect: 2.08586e-144
Length: 433, Idn/Pos/Gap = 244/336/0 (56%/77%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+   + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGLRSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT+   L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDPQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGIL KLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEATPYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSA FLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFT AN+ LPGTS+FIGEF+IL
Sbjct: 302 SSAPFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTPANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIF 476
              + MG+YP +F
Sbjct: 422 AGVIWMGVYPEVF 434


emb|CAC48230.1| NADH dehydrogenase subunit 4 [Timmia megapolitana subsp. bavarica]
(415 aa)

Score: 518 bits (1333), Expect: 3.21896e-144
Length: 413, Idn/Pos/Gap = 237/329/0 (57%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F + ES ++ 
Sbjct:   3 RWLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F  +DLLLFY+FFE V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+
Sbjct:  63 VFCMLDLLLFYVFFESVSIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AY S
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYPS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVGVLYDR+KTR++KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGVLYDRHKTRLVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWP 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
           YNR+IFGN K  + +   D++++E +   P ++  + MG+YP +FL  +H ++
Sbjct: 363 YNRVIFGNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYPEVFLECMHTSV 415


ref|YP_004935339.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
gb|AEM46196.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
gb|AFI44281.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
gb|AFI44300.1| NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]
(495 aa)

Score: 518 bits (1333), Expect: 3.35609e-144
Length: 473, Idn/Pos/Gap = 258/350/0 (54%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP +++  IR   L  S +TFL +  L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSRIRSIRLIGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    + E +++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFIMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+  E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVLSESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK  +     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPYFLHKFSDPNGREIFIFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQH 491


ref|NP_062496.1| NADH dehydrogenase subunit 4 [Chondrus crispus]
sp|P48915.1|NU4M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4
emb|CAA87623.1| NADH dehydrogenase (ubiquinone), subunit 4 [Chondrus crispus]
(492 aa)

Score: 517 bits (1332), Expect: 4.13451e-144
Length: 476, Idn/Pos/Gap = 284/376/3 (59%/78%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G  I++ IP  +  L R F+L IS LTFL ++ LWI F+    +FQF  +     F 
Sbjct:  16 PLIGVFILLLIPSAKEKLCRNFALWISCLTFLFSLLLWIQFNSGTSFFQFSTTFLWFPFF  75

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            + Y +G+DGISLFFI+LT+LLI  C L++W++ +   K++LI F ++E LL+  FS +D
Sbjct:  76 NLYYTIGIDGISLFFILLTTLLIISCILVSWSSIQTNLKDYLICFLILEFLLIQVFSVLD 135

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFYI+FE VLIP+F I+G++GSR RKIRA+YQFFLYTL+GSLL+L+A+L IYF+TGTT
Sbjct: 136 LLLFYIYFESVLIPMFLIVGVWGSRQRKIRAAYQFFLYTLIGSLLMLLALLNIYFQTGTT 195

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L+ + F E  Q+ LWL+FFASFAVK+PMIPFHIWLPEAHAEAPT+GS+ILAGILLK
Sbjct: 196 DLQILWYIQFSEISQIFLWLSFFASFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLK 255

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFSLP+FP AS +++P I+TLS++AIIYASLTTLRQ+DLKKI+AYSS++H+G+
Sbjct: 256 MGGYGFLRFSLPMFPVASIFFTPFIFTLSLVAIIYASLTTLRQIDLKKIIAYSSVSHMGF 315

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIFS N+QG+EGS+LL+L HG VSSALFLC+GVLYDRYKTR++KYYSGL   +PLF 
Sbjct: 316 VTIGIFSLNIQGIEGSILLMLSHGLVSSALFLCIGVLYDRYKTRVIKYYSGLIQVMPLFG 375

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           V   FFT AN+G PGTS+FIGE ++L+   Q +   T+F++ G+I  A+Y +W +NR+IF
Sbjct: 376 VFFLFFTFANLGFPGTSSFIGEVLVLLSSFQINKTLTLFASLGMIFGAAYSIWLFNRIIF 435

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIH---ITILRLLTH 490
           G+LK  YF   QDIS++EF  LIPL IL L MG+YPN FL+ IH   + +L L++H
Sbjct: 436 GSLKLGYFSSFQDISRREFWILIPLAILILWMGIYPNSFLNEIHFSSVNLLELISH 491


ref|YP_006280981.1| nad4 gene product (mitochondrion) [Helicosporidium sp. ex Simulium jonesi]
gb|ACT36208.1| NADH dehydrogenase subunit 4 [Helicosporidium sp. ex Simulium jonesi]
(490 aa)

Score: 517 bits (1331), Expect: 5.13617e-144
Length: 477, Idn/Pos/Gap = 274/362/5 (57%/75%/1%)

Query:  17 FPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVIS-----K  71
           FP+LG  +I+ +P  Q   I+  +LI + LTFL +++LW+ FD S  +FQ         +
Sbjct:  10 FPILGIFLILTMPDWQGTKIKTIALITTLLTFLTSLFLWLEFDSSTAFFQLTSDYNSLLE  69

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
              +F  +   LG+DGISLFFIILT+LL  +C L++W+  + Y KE+ I F ++E  +L 
Sbjct:  70 NYFSFSTLNLSLGIDGISLFFIILTTLLTPICILVSWDNIQNYVKEYCIAFLVLEVFMLA 129

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            FS  DLLLFYIFFE VLIP+F IIG++GSR RKIRA+YQFFLYTL GS+L+L+A+LLIY
Sbjct: 130 VFSVTDLLLFYIFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVLMLLALLLIY 189

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TG+ ++  LY  ++ E +Q+LLWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 190 FQTGSLDLEILYATEWSESRQILLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVIL 249

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFSLP+FPYAS Y++PLIYT+SIIAIIY S TTLRQ+DLKKI+AYSS
Sbjct: 250 AGILLKLGTYGFLRFSLPMFPYASLYFTPLIYTMSIIAIIYTSCTTLRQIDLKKIIAYSS 309

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V LGIFS N+QG+EGS+LL++ HG +S ALFLCVGVLYDRYKTRIL+YYSG   
Sbjct: 310 VAHMNFVTLGIFSQNIQGIEGSILLMISHGLISPALFLCVGVLYDRYKTRILRYYSGCGR 369

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+FA+   FFT++NI LPGTS+F GEF+IL G+   + IATI + +G++L A Y LW 
Sbjct: 370 TMPIFALFFVFFTMSNISLPGTSSFPGEFLILTGVYLNNTIATILAATGMVLGAGYALWL 429

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
            NRLI+G  K  +     D++++EFM  IPL+I  L +G+ P  F+ +IH + + L+
Sbjct: 430 CNRLIYGVFKPEFIYLYSDLNRREFMMFIPLIIPILWIGINPEAFIDTIHASCIHLV 486


emb|CAC39485.1| NADH dehydrogenase subunit 4 [Corsinia coriandra]
(418 aa)

Score: 517 bits (1331), Expect: 6.11978e-144
Length: 409, Idn/Pos/Gap = 237/328/0 (57%/80%/0%)

Query:  79 IQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDL 138
           I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+  F ++DL
Sbjct:  10 INFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLVAVFCSLDL  69

Query: 139 LLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTN 198
           L+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT+
Sbjct:  70 LIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTD 129

Query: 199 INFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKL 258
           +  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILL+L
Sbjct: 130 LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLRL 189

Query: 259 GGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYV 318
           G YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V
Sbjct: 190 GTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 249

Query: 319 ILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAV 378
            +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL + +P+F+ 
Sbjct: 250 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 309

Query: 379 LLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFG 438
           +  FFTLAN+ LPGTS+ IGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++FG
Sbjct: 310 IFLFFTLANMSLPGTSSLIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFG 369

Query: 439 NLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           N K N+     D++++E +  +P ++  + MG+YP +FL  +H ++  L
Sbjct: 370 NFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLECMHTSVSNL 418


gb|AEY83713.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Tritomaria quinquedentata]
(429 aa)

Score: 516 bits (1330), Expect: 7.66609e-144
Length: 428, Idn/Pos/Gap = 244/336/0 (57%/78%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFISFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSPNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGL 471
              + MG+
Sbjct: 422 AGVIWMGV 429


gb|AEY83706.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Syzygiella autumnalis]
(437 aa)

Score: 516 bits (1329), Expect: 1.0793e-143
Length: 435, Idn/Pos/Gap = 244/336/0 (56%/77%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL  ++ WI  +     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYPLFFWIRSENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
             + + + + Y KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 IPVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIPFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALF CVG LYDR+KTRI+KYY GL + +P+F+ +  F TLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFSCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFSFSTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIRMGVYPEVFLE 436


gb|AEY83696.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Ptilidium pulcherrimum]
(437 aa)

Score: 516 bits (1329), Expect: 1.10666e-143
Length: 435, Idn/Pos/Gap = 243/336/0 (55%/77%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES  +  F ++DLL+FY+F E VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFSIAVFCSLDLLIFYVFLESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFISFQTGTTDLQILPTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGF RFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFSRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG LYDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGALYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSPWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


gb|ACO50733.1| NADH dehydrogenase subunit 4 [Micromonas pusilla CCMP1545]
(487 aa)

Score: 516 bits (1328), Expect: 1.25421e-143
Length: 473, Idn/Pos/Gap = 254/355/0 (53%/75%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G  ++  +PR     I+  +L ++ + F++ + LW++FD +   FQFV +   L   
Sbjct:  12 PLVGAGVVALLPRKATTSIQAVALSVALVNFVVAVALWMVFDTTTAKFQFVSTLSWLPLG  71

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            +   LGVDGISL F++LT+ L+ VC L+ W       KE+ I F ++E  ++  F  +D
Sbjct:  72 NMTVSLGVDGISLLFLVLTTFLVPVCLLVGWVNIHTKVKEYCIAFLLLEVGMIAVFCLLD 131

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VL+P+F IIG++GSR RKIRA+YQFFLYTL+GS+L+L+A+LL+YF+ GTT
Sbjct: 132 LLLFYVFFESVLLPMFVIIGVWGSRERKIRAAYQFFLYTLIGSVLMLVALLLMYFQVGTT 191

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L    F +++Q+LLWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 192 DLQVLLVSHFSDKRQVLLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 251

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+PLFP AS Y+ PL+YTLS+I IIYASLTTLRQ+DLKKI+AYSS+AH+G+
Sbjct: 252 LGTYGFLRFSIPLFPMASLYFMPLVYTLSLIGIIYASLTTLRQIDLKKIIAYSSVAHMGF 311

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V LG+FS N+QG+EG+L+L+L HGFV+SALFLC+G +YDR  TR+L+YY GL   +PLFA
Sbjct: 312 VTLGLFSLNLQGIEGALILMLSHGFVASALFLCIGCVYDRTHTRVLQYYGGLVHVMPLFA 371

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
                FT+ N+ LPGTS+F+GEF+IL+G  QT+ +A   + +G++L  +Y +W YNR++F
Sbjct: 372 FFFLVFTMGNLSLPGTSSFVGEFLILVGTFQTNTLAATLAATGMVLGGAYSVWLYNRVVF 431

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           G+LK  Y     D+S++EF   +P V+  L MG +P +FL ++H+++  L+ H
Sbjct: 432 GSLKPMYLASAADLSRREFWLFLPFVVAILWMGFFPGVFLDTMHLSVSNLIQH 484


ref|YP_004339011.1| NADH dehydrogenase subunit 4 [Coccomyxa subellipsoidea C-169]
gb|ADY75453.1| NADH dehydrogenase subunit 4 [Coccomyxa subellipsoidea C-169]
(490 aa)

Score: 515 bits (1326), Expect: 2.32551e-143
Length: 477, Idn/Pos/Gap = 268/356/7 (56%/74%/1%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILN-----  75
           G ++I+F+P     L+R      S LTFLI++ LWI FD S   FQFV S  ++      
Sbjct:  14 GVLLILFVPAWNEKLVRSIGFAASLLTFLISLLLWIQFDNSSGRFQFVNSFALIQPSANG  73

Query:  76 --FELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
             +  + + +G+DGISLFFI+LT+ LI +C L+ W   +   KE+ + F ++ESLL+ AF
Sbjct:  74 GEYTTLSFVVGLDGISLFFIVLTTFLIPICILVGWTTIKASVKEYCVAFLVLESLLIAAF 133

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
           S +DLL FYIFFE VLIP+F IIG++GSR RKIRA+YQFFLYTL+GSLL+L+AILLIY +
Sbjct: 134 SVLDLLFFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLVGSLLMLLAILLIYCQ 193

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
           TGTT++  LY   F E ++L+LWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAG
Sbjct: 194 TGTTDLQILYATQFSETRELILWLAFFASFAVKVPMLPVHIWLPEAHVEAPTAGSVILAG 253

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLKLG YGFLRFS+PLFPYAS +++PLI TLSI+AIIY+SLTTLRQVDLKKI+AYSS+A
Sbjct: 254 ILLKLGTYGFLRFSIPLFPYASIFFTPLIETLSILAIIYSSLTTLRQVDLKKIIAYSSVA 313

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+ +V LG+FS N QG+EG++LL+L HG VS ALFL VG LYDR+KTR+L+YY G    +
Sbjct: 314 HMNFVTLGLFSLNPQGVEGAVLLMLAHGLVSPALFLLVGFLYDRHKTRLLRYYGGCARSM 373

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P+FA++  FFT+ANI LPGT+NF+GEF++L+G  +++      + S ++L A+Y LW  N
Sbjct: 374 PIFAIMFLFFTMANISLPGTANFVGEFLVLVGAFRSNTFVATMAASTMVLGAAYALWLCN 433

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           RL++G  K  Y     D+S++EF  L+P V   L+MGL P++FL  I  ++  +L  
Sbjct: 434 RLLYGFPKPYYLAAFADLSRREFFLLLPFVASVLVMGLMPDVFLDVIRCSVANILQR 490


gb|AEY83691.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Targionia hypophylla]
(410 aa)

Score: 514 bits (1325), Expect: 2.74784e-143
Length: 409, Idn/Pos/Gap = 237/328/0 (57%/80%/0%)

Query:  70 SKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLL 129
           + + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L
Sbjct:   1 TNRWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFL  60

Query: 130 LNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILL 189
           +  F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL 
Sbjct:  61 IAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILF 120

Query: 190 IYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSI 249
           I+F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+
Sbjct: 121 IFFQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSV 180

Query: 250 ILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAY 309
           ILAGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AY
Sbjct: 181 ILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAY 240

Query: 310 SSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGL 369
           SS+AH+ +V +G+FS N+QG+EGS+LL++ HG VSSALFLCVG LYDR+KTRI+KYY GL
Sbjct: 241 SSVAHMNFVTIGMFSLNIQGIEGSILLMVSHGLVSSALFLCVGALYDRHKTRIVKYYGGL 300

Query: 370 TTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCL 429
            + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y L
Sbjct: 301 VSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSL 360

Query: 430 WFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLH 478
           W YNR++FGN K N+     D++++E +  +P ++  + MG+YP +FL 
Sbjct: 361 WLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLE 409


gb|AEY83701.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Calypogeia muelleriana]
(430 aa)

Score: 514 bits (1325), Expect: 3.14029e-143
Length: 422, Idn/Pos/Gap = 241/330/0 (57%/78%/0%)

Query:  55 WILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEY 114
           WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + E Y
Sbjct:   6 WIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVESY  65

Query: 115 NKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFL 174
            KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFL
Sbjct:  66 KKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFL 125

Query: 175 YTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHI 234
           YTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HI
Sbjct: 126 YTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHI 185

Query: 235 WLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYAS 294
           WLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY LS+IAIIY S
Sbjct: 186 WLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTS 245

Query: 295 LTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVL 354
           LTT+RQ+DLKKI+AYSS+AH+ +V +G+F  N+QG+EGS+LL+L HG VSSA FLCVG L
Sbjct: 246 LTTIRQIDLKKIIAYSSVAHMNFVTIGMFGLNIQGIEGSILLMLSHGPVSSAPFLCVGAL 305

Query: 355 YDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIAT 414
           YDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +  
Sbjct: 306 YDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVA 365

Query: 415 IFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPN 474
             +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +   + MG+YP 
Sbjct: 366 ALAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMGVYPE 425

Query: 475 IF 476
           +F
Sbjct: 426 VF 427


ref|YP_004062232.1| NADH dehydrogenase subunit 4 [Plocamiocolax pulvinata]
gb|ADR03248.1| NADH dehydrogenase subunit 4 [Plocamiocolax pulvinata]
(490 aa)

Score: 514 bits (1324), Expect: 3.44215e-143
Length: 480, Idn/Pos/Gap = 272/371/0 (56%/77%/0%)

Query:  11 LIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVIS  70
           LI ++  PL+G  +++ I  +   L R  +LI S L+FL ++ +W+ FDES  +FQFV +
Sbjct:  10 LIVVSLIPLIGIFVMLPISSSNYFLCRQIALITSCLSFLFSLLIWVKFDESSSFFQFVDT  69

Query:  71 KKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLL 130
             +  +  + Y +G+DGISLFF+ILT+LLI +C L++W +   + KE+LI F ++E +L+
Sbjct:  70 FILFPYFNLHYIIGIDGISLFFVILTTLLILLCILVSWGSINYFFKEYLISFLILEFILI 129

Query: 131 NAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLI 190
             F  +DLLLFY+FFE VLIP+F IIG++GS+ RKIRA+YQ FLYTL+GSLL+L+A+L I
Sbjct: 130 QVFIVLDLLLFYVFFESVLIPMFLIIGVWGSKKRKIRAAYQLFLYTLVGSLLMLLALLYI 189

Query: 191 YFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSII 250
           Y+  G+T++  L+  +F E+ Q++LW+AFFASFAVK+PMIPFHIWLPEAHAEAPT+GS++
Sbjct: 190 YYLAGSTDLQILWEYNFTEKMQIVLWIAFFASFAVKIPMIPFHIWLPEAHAEAPTAGSVV 249

Query: 251 LAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYS 310
           LAGILLK+GGYGFLRFSLP+FP A  Y+SPLI+ LS++AIIYAS TTLRQ+DLKKI+AYS
Sbjct: 250 LAGILLKIGGYGFLRFSLPMFPLACIYFSPLIFMLSVVAIIYASFTTLRQIDLKKIIAYS 309

Query: 311 SIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLT 370
           SI+H+G+V +GI++ N++G+EGSLLL+L HGF+SSALF CVGVLYDRY+TRILKYYSGL 
Sbjct: 310 SISHMGFVTIGIYTLNIEGIEGSLLLMLSHGFISSALFFCVGVLYDRYQTRILKYYSGLI 369

Query: 371 TFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLW 430
             +PLF V  F FT ANI  PGTS+FIGE +ILIG+ Q + + T     G++LSA+Y +W
Sbjct: 370 QVMPLFGVYFFIFTFANISFPGTSSFIGELLILIGIFQLNFLLTFIMAFGMVLSAAYSVW 429

Query: 431 FYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
            +NRL F  LK +YF   QDIS++EF  + PL+ L   MG YPN FL+ +H +++ L+  
Sbjct: 430 LFNRLHFYTLKLHYFLKFQDISRREFWIIFPLLFLLFWMGFYPNPFLNVVHFSVISLIEQ 489


gb|AEY83726.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Tetraphis pellucida]
(418 aa)

Score: 514 bits (1324), Expect: 4.20531e-143
Length: 416, Idn/Pos/Gap = 237/329/0 (56%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF++LT+ LI +C L+ W++ + Y KE++I F + ES ++ 
Sbjct:   3 RWLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLIRESFMIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
               +DLLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I+
Sbjct:  63 VSCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYS 
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSP 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N QG+EGS+LL+L HG +SSAL +CVGVLYDR+KTR++KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNTQGIEGSILLMLSHGPISSALSICVGVLYDRHKTRLVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+FA +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPMFATIFPFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           YNR+IFGN K  + +   D++++E +  +P ++  + MGLYP +FL  +H ++  L
Sbjct: 363 YNRVIFGNFKPKFLQKFSDLNRREVLIFLPFIVGVIWMGLYPEVFLECMHTSVSNL 418


gb|AEY83702.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Diplophyllum albicans]
(426 aa)

Score: 514 bits (1323), Expect: 4.76598e-143
Length: 423, Idn/Pos/Gap = 242/331/0 (57%/78%/0%)

Query:  56 ILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYN 115
           I F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y 
Sbjct:   3 IRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYK  62

Query: 116 KEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLY 175
           KE++I FF+ ES L+  F ++DLL+FY+FFE VLIP+  IIG++GSR RKI+A+YQFFLY
Sbjct:  63 KEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMSIIIGVWGSRQRKIKAAYQFFLY 122

Query: 176 TLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIW 235
           TL+GSL +L+AIL I F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIW
Sbjct: 123 TLMGSLFMLLAILSISFQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIW 182

Query: 236 LPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASL 295
           LPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY LS+IAIIY SL
Sbjct: 183 LPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSL 242

Query: 296 TTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLY 355
           TT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LY
Sbjct: 243 TTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALY 302

Query: 356 DRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATI 415
           DR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +   
Sbjct: 303 DRHKTRIVKYYGGLVSTMPIFSTIFPFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAT 362

Query: 416 FSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNI 475
            +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +   + MG+YP +
Sbjct: 363 LAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMGVYPEV 422

Query: 476 FLH 478
           FL 
Sbjct: 423 FLE 425


ref|YP_514653.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group]
ref|YP_002000570.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group]
dbj|BAC19875.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group]
gb|AAZ99271.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica Group]
gb|AAZ99325.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Japonica Group]
gb|AAZ99378.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Japonica Group]
dbj|BAI68011.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group]
gb|AER13014.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica Group]
gb|AER13087.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica Group]
gb|AEZ03738.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica Group]
gb|AEZ03802.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza sativa Indica Group]
(495 aa)

Score: 513 bits (1321), Expect: 8.33559e-143
Length: 473, Idn/Pos/Gap = 254/349/0 (53%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP + + LIR   L +S +TFL  +   I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSSIRLIRLIGLCVSLITFLYPLVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    + KE++  F + E L++     +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVSIFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


gb|AEY83708.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Mylia taylorii]
(418 aa)

Score: 513 bits (1320), Expect: 1.22356e-142
Length: 412, Idn/Pos/Gap = 238/328/0 (57%/79%/0%)

Query:  65 FQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFM 124
           FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+
Sbjct:   4 FQFVETIRWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFI  63

Query: 125 IESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLIL 184
            ES L+  F ++DLL+FY+F E VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L
Sbjct:  64 CESFLIAVFCSLDLLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFML 123

Query: 185 IAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAP 244
           +AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAP
Sbjct: 124 LAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAP 183

Query: 245 TSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLK 304
           T+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY  S+IAIIY SLTT+RQ+DLK
Sbjct: 184 TAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYASSVIAIIYTSLTTIRQIDLK 243

Query: 305 KIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILK 364
           KI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+K
Sbjct: 244 KIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVK 303

Query: 365 YYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILS 424
           YY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL 
Sbjct: 304 YYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILG 363

Query: 425 ASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIF 476
           A+Y LW YNR++FGN K N+     D++++E +  +P ++  + MG+YP +F
Sbjct: 364 AAYSLWPYNRVVFGNFKPNFLLKFSDLNRREVLLFLPFIVGVIRMGVYPEVF 415


gb|AEY83725.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Sphagnum fallax]
(418 aa)

Score: 512 bits (1319), Expect: 1.26508e-142
Length: 413, Idn/Pos/Gap = 236/328/0 (57%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF++LT+ LI +C L+  ++ + Y +E++I F + ES ++ 
Sbjct:   3 RWLPYPNIHFYIGIDGISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F  +DLLLFY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I 
Sbjct:  63 VFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIP 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
            +TG+T++  L   +F ER+Q+LLW+AFFASF+VKVPMIPFHIWLPEAH EAPT+GS+IL
Sbjct: 123 SQTGSTDLQILLTTEFSERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P +Y LS+IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTR++KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
           YNR+IFGN K  + +   D++++E +  +P V+  + MG+YP +FL  +H +I
Sbjct: 363 YNRVIFGNFKPKFLQKFSDLNRREVLIFLPFVVGIIWMGVYPEVFLECMHTSI 415


ref|YP_004927572.1| nad4 (mitochondrion) [Brassica carinata]
gb|AEH43587.1| nad4 [Brassica carinata]
(495 aa)

Score: 511 bits (1316), Expect: 3.0381e-142
Length: 473, Idn/Pos/Gap = 252/340/0 (53%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++  F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+  PGTS+FIGEF IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFSFTLANMSSPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491


dbj|BAM36209.1| NADH dehydrogenase subunit 4 (mitochondrion) [Raphanus sativus]
(495 aa)

Score: 511 bits (1315), Expect: 3.80575e-142
Length: 473, Idn/Pos/Gap = 251/341/0 (53%/72%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++  F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E V IP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G +GFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFSFTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|NP_689375.1| NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum]
gb|AAM96607.1|AF494279_12 NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum]
(485 aa)

Score: 510 bits (1314), Expect: 5.77593e-142
Length: 459, Idn/Pos/Gap = 249/350/2 (54%/76%/0%)

Query:  31 NQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISL  90
           + + LI+   L IS +TF+ ++  WI FD S   FQFV     L+F  I ++ G+DGISL
Sbjct:  25 SNIRLIKRVGLSISLITFVYSLLFWICFDNSCTKFQFVEQIPWLSFSNINFYYGIDGISL  84

Query:  91 FFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLI 150
            F+ILT+ L+  C L+ W++  +Y +E+ + F ++E+ +L  F  +D+LLF++FFE VLI
Sbjct:  85 LFLILTTFLVPSCLLVGWSSISKYQREYFVAFLVLEAFMLAVFCMLDVLLFFVFFESVLI 144

Query: 151 PIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYER 210
           P+F IIG++GSR RKIRA+YQFFLYTL GS+ +L+AIL IYF+TGTT++  LY+ ++  R
Sbjct: 145 PMFIIIGVWGSRQRKIRAAYQFFLYTLFGSVFMLLAILFIYFQTGTTDVQILYSTEWSTR 204

Query: 211 KQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPL 270
           +Q+LL++AFFASFAVK+PM+P HIWLPEAH EAPT+GS+ILAGILLKLG YG LRFS+P+
Sbjct: 205 RQILLFIAFFASFAVKIPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGLLRFSMPM 264

Query: 271 FPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGL 330
           FP A+ Y++P IYTLS+IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +V +G+FS NVQG+
Sbjct: 265 FPEATAYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNVQGI 324

Query: 331 EGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGL 390
           EGS+LL+L HG VSSALFLCVG LYDR+ TR++KYY GL + +P+F+++  FFTL N+ L
Sbjct: 325 EGSILLMLSHGLVSSALFLCVGALYDRHHTRLVKYYGGLCSTMPIFSLIFLFFTLGNMSL 384

Query: 391 PGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQD 450
           PGTS+F+GEF+IL+G  Q++      +  G++L A+Y +W YNR++FGN K  +     D
Sbjct: 385 PGTSSFVGEFLILVGAFQSNTSIATLAAIGMVLGAAYSIWLYNRVVFGNWK--HIHNFTD 442

Query: 451 ISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLT 489
           ++++E   + P VI  L MG+YP IFL  +H ++  L++
Sbjct: 443 LNRRELCLIAPFVIGVLWMGIYPEIFLDCMHSSVNNLIS 481


gb|AEY83689.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Riella sp. SC s.n.]
(395 aa)

Score: 509 bits (1312), Expect: 8.83951e-142
Length: 394, Idn/Pos/Gap = 235/319/0 (59%/80%/0%)

Query:  85 VDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIF 144
           +DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+F
Sbjct:   1 IDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVF  60

Query: 145 FEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYN 204
           FE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L  
Sbjct:  61 FESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLT 120

Query: 205 VDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFL 264
            +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFL
Sbjct: 121 TEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFL 180

Query: 265 RFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFS 324
           RFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS
Sbjct: 181 RFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFS 240

Query: 325 FNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFT 384
            N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL + +P+F+ +  FFT
Sbjct: 241 LNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFT 300

Query: 385 LANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENY 444
           LAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++FGN K N+
Sbjct: 301 LANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNF 360

Query: 445 FKFLQDISKKEFMALIPLVILTLIMGLYPNIFLH 478
                D++++E +  +P ++  + MG+YP +FL 
Sbjct: 361 ILKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLE 394


gb|ABC67282.1| NADH dehydrogenase subunit 4 [Sphagnum fallax]
(418 aa)

Score: 509 bits (1312), Expect: 9.1395e-142
Length: 413, Idn/Pos/Gap = 235/327/0 (56%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF++LT+ LI +C L+  ++ + Y +E++I F + ES ++ 
Sbjct:   3 RWLPYPNIHFYIGIDGISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F  +DLLLFY+FFE VLIP+  IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AIL I 
Sbjct:  63 VFCMLDLLLFYVFFESVLIPMSIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIP 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
            +TG+T++  L   +F ER+Q+LLW+AFFASF+VKVPMIPFHIWLPEAH EAPT+GS+IL
Sbjct: 123 SQTGSTDLQILLTTEFSERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P +Y LS+IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTR++KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
           YNR+IFGN K  + +   D++++E +  +P V+  + MG+YP +FL  +H +I
Sbjct: 363 YNRVIFGNFKPKFLQKFSDLNRREVLIFLPFVVGIIWMGVYPEVFLECMHTSI 415


gb|AEY83695.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Porella platyphylla]
(437 aa)

Score: 509 bits (1311), Expect: 1.3084e-141
Length: 435, Idn/Pos/Gap = 243/335/0 (55%/77%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++  I F+     FQFV +   L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFXIRFENDTAKFQFVETIXWLPYSNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+F E VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFLESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLXILPTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG Y FLR S+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYXFLRXSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVGVLYDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFLCVGVLYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSPWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP  FL 
Sbjct: 422 AGVIWMGVYPEAFLE 436


ref|NP_085518.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
ref|YP_006666006.1| NADH dehydrogenase subunit 4 (mitochondrion) [Raphanus sativus]
emb|CAA69742.3| NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
gb|AEK01259.1| nad4 [Arabidopsis thaliana]
gb|AEK01288.1| nad4 [Arabidopsis thaliana]
dbj|BAM36250.1| NADH dehydrogenase subunit 4 (mitochondrion) [Raphanus sativus]
(495 aa)

Score: 509 bits (1311), Expect: 1.3084e-141
Length: 473, Idn/Pos/Gap = 250/340/0 (52%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++  F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E V IP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G +GFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFSFTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|YP_762351.1| NADH dehydrogenase subunit 4 [Sorghum bicolor]
gb|ABI60882.1| NADH dehydrogenase subunit 4 (mitochondrion) [Sorghum bicolor]
(495 aa)

Score: 508 bits (1309), Expect: 2.08768e-141
Length: 473, Idn/Pos/Gap = 253/346/0 (53%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP + +  IR   L +S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSSIRPIRLIGLCVSLITFLYPPVPRIQFDPSTANSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    + KE++  F + E L++     +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVSIFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|YP_398409.1| nad4 [Triticum aestivum]
dbj|BAE47673.1| nad4 [Triticum aestivum]
gb|ABY55192.1| NADH dehydrogenase subunit 4 [Bambusa oldhamii]
gb|ACA62621.1| nad4 [Triticum aestivum]
gb|ADE08084.1| nad4-1 [Triticum aestivum]
gb|ADE08085.1| nad4-2 [Triticum aestivum]
gb|ADE08086.1| nad4-3 [Triticum aestivum]
(495 aa)

Score: 508 bits (1309), Expect: 2.10517e-141
Length: 473, Idn/Pos/Gap = 253/346/0 (53%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP + +  IR   L +S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSSIRPIRLIGLCVSLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    + KE++  F + E L++     +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVSIFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|YP_001874783.1| NADH dehydrogenase subunit 4 [Hemiselmis andersenii]
gb|ACC78237.1| NADH dehydrogenase subunit 4 [Hemiselmis andersenii]
(486 aa)

Score: 508 bits (1309), Expect: 2.14059e-141
Length: 474, Idn/Pos/Gap = 260/367/0 (54%/77%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL G  ++ FI     V I+  +L+ S +TF  +++LWILFD S   FQF    + L   
Sbjct:  13 PLCGIFLLFFIHETNAVAIKMTALVFSLITFFYSLFLWILFDHSTARFQFTEYVEWLWSY  72

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            + +F+GVDGISL FI+LT+LLI +C L +W++ ++  KE+   F ++ESLL+  FS++D
Sbjct:  73 NLYFFIGVDGISLLFILLTTLLIPLCILSSWSSVKKSIKEYYSYFLLMESLLICVFSSLD 132

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           L++F+IFFE +LIP++ IIG +GSRTRKI+A +QFFLYTL+GS+L+L+AI +IYFETGTT
Sbjct: 133 LIIFFIFFESILIPMYLIIGFWGSRTRKIKAGFQFFLYTLIGSVLMLLAIFVIYFETGTT 192

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +   + N  F +R+Q+LLWLAFF SFA+KVPM+PFHIWLPEAH EAPTSGS+ILAG+LLK
Sbjct: 193 DYQLVSNFTFSDRRQILLWLAFFMSFAIKVPMMPFHIWLPEAHVEAPTSGSVILAGVLLK 252

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +G YG LRFS+ LFP  SFY++PL+YT+S+IA+IY SLTTLRQ+DLKKI+AYSS+AH+G+
Sbjct: 253 MGTYGLLRFSIALFPQGSFYFTPLVYTMSVIAVIYTSLTTLRQIDLKKIIAYSSVAHMGF 312

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS NVQGLEGS++++L HGFVSSALFLC+GVLY+R+ TR++KYY+G+   IPLF+
Sbjct: 313 VTIGLFSLNVQGLEGSIVIMLSHGFVSSALFLCIGVLYERHHTRLIKYYTGVAQIIPLFS 372

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           +  FFF++AN+G PGTS+F+GEF+ L+G+ +++   T  + +G++L A+Y LW  NR++F
Sbjct: 373 IFFFFFSMANLGFPGTSSFVGEFLTLVGVFESNTCVTFLAATGMVLGAAYSLWLCNRILF 432

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           G L   Y     +I+++EF  LIPL   TL  G+YP + L S+H+++  +LT I
Sbjct: 433 GKLNTEYISQYTEINRREFAMLIPLAFCTLFFGVYPELILDSLHMSVTNILTKI 486


gb|AEK66757.1| NADH dehydrogenase subunit 4 [Ferrocalamus rimosivaginus]
gb|AEX98089.1| NADH dehydrogenase subunit 4 (mitochondrion) [Ferrocalamus rimosivaginus]
(495 aa)

Score: 508 bits (1308), Expect: 2.65919e-141
Length: 473, Idn/Pos/Gap = 253/346/0 (53%/73%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP + +  IR   L +S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSSIRPIRLIGLCVSLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    + KE++  F + E L++     +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFLLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVSIFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


gb|AEY83709.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Nardia scalaris]
(430 aa)

Score: 508 bits (1308), Expect: 2.86657e-141
Length: 428, Idn/Pos/Gap = 238/331/0 (55%/77%/0%)

Query:  51 TIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNA 110
           +++ WI F+     FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C L+ + +
Sbjct:   2 SLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYS  61

Query: 111 NEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASY 170
            + Y KE++I FF+ ESLL+    + DLL+FY+FFE VLIP+F IIG++GSR RKI+A+Y
Sbjct:  62 VKSYKKEYMIAFFIRESLLIAVSCSPDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAY 121

Query: 171 QFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMI 230
           QFFLYTL+GSL +L+AIL I+ +TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+
Sbjct: 122 QFFLYTLMGSLFMLLAILFIFSQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMV 181

Query: 231 PFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAI 290
           P HIWLPEAH EAPT+GS+ILAGIL KLG YGFLRFS+P+FP A+ Y++P IY LS+IAI
Sbjct: 182 PVHIWLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAI 241

Query: 291 IYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLC 350
           IY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG VSSA   C
Sbjct: 242 IYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSAPLSC 301

Query: 351 VGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTS 410
           VG LYDR+KTRI+KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q +
Sbjct: 302 VGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRN 361

Query: 411 VIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMG 470
            +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +   + MG
Sbjct: 362 SLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMG 421

Query: 471 LYPNIFLH 478
           +YP +F+ 
Sbjct: 422 VYPEVFVE 429


emb|CAA40452.1| NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum]
emb|CAA40453.1| NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum]
(495 aa)

Score: 508 bits (1307), Expect: 3.11601e-141
Length: 473, Idn/Pos/Gap = 253/345/0 (53%/72%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP + +  IR   L +S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSSIRPIRLIGLCVSLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    + KE++  F + E L++     +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +       G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVSIFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


gb|AEY83698.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Anastrophyllum minutum]
(410 aa)

Score: 508 bits (1307), Expect: 3.3311e-141
Length: 407, Idn/Pos/Gap = 237/324/0 (58%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+ 
Sbjct:   3 RWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I 
Sbjct:  63 VFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIS 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IY LS+IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL +
Sbjct: 243 VAHMNFVTIGMFSPNIQGIEGSILLMLSHGPVSSALFLCVGALYDRHKTRIVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLH 478
           YNR++FGN K N+     D++++E +  +P +   + MG+YP +FL 
Sbjct: 363 YNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMGVYPEVFLE 409


ref|YP_004927458.1| nad4 (mitochondrion) [Brassica oleracea]
ref|YP_004927874.1| nad4 (mitochondrion) [Brassica rapa subsp. campestris]
ref|YP_004927777.1| nad4 (mitochondrion) [Brassica juncea]
sp|Q04050.1|NU4M_BRACM RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4
emb|CAA43207.1| NADH dehydrogenase subunit 4 [Brassica rapa]
gb|AEH43468.1| nad4 [Brassica rapa subsp. campestris]
gb|AEH43486.1| nad4 [Brassica oleracea]
gb|AEH43692.1| nad4 [Brassica juncea]
emb|CBX48375.1| nad4 [Brassica napus]
prf||2001250A NADH dehydrogenase:SUBUNIT=4
(495 aa)

Score: 507 bits (1306), Expect: 4.72912e-141
Length: 473, Idn/Pos/Gap = 250/338/0 (52%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++  F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E V IP+F IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G +GFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 FGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+  PGTS+FIGEF IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFSFTLANMSSPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491


gb|AEY83686.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Reboulia hemisphaerica]
(410 aa)

Score: 507 bits (1305), Expect: 5.63478e-141
Length: 408, Idn/Pos/Gap = 235/325/0 (57%/79%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF+ILT+ L  +C L+ + + + Y KE++I FF+ ES L+ 
Sbjct:   3 RWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F ++DLL+FY+FFE VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+
Sbjct:  63 VFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TG+T++  L   +F ER+Q+LLW+AFFA F+VKV M+P HIWLPEAH EAPT+GS+IL
Sbjct: 123 FQTGSTDLQILLTTEFSERRQILLWIAFFAPFSVKVLMVPVHIWLPEAHVEAPTAGSVIL 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGILLKLG YGFLRFS+P+FP A+ Y++P IYTLS+IAIIY SLTT+RQ+DLKKI+AYSS
Sbjct: 183 AGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSS 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSALFLCVG LYDR+KTRI+KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW 
Sbjct: 303 TMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHS 479
           YNR++FGN K N+     D++++E +  +P ++  + MG+YP +FL  
Sbjct: 363 YNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYPEVFLEC 410


ref|YP_005090296.1| nad4 gene product (mitochondrion) [Heterosigma akashiwo]
gb|ACS27114.1| NADH dehydrogenase subunit 4 [Heterosigma akashiwo]
gb|ACS27153.1| NADH dehydrogenase subunit 4 [Heterosigma akashiwo]
dbj|BAI70610.1| NADH dehydrogenase subunit 4 [Heterosigma akashiwo]
(491 aa)

Score: 507 bits (1305), Expect: 6.1251e-141
Length: 472, Idn/Pos/Gap = 260/351/2 (55%/74%/0%)

Query:  20 LGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELI  79
           +G  +    P      ++ F+L +S   F  +++LWI FD+S   FQFV S    +   I
Sbjct:  17 MGAFLSALWPSRYERGLKIFALNLSFFVFFCSLFLWIWFDQSTAKFQFVTSFPWFSSLNI  76

Query:  80 QYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLL 139
               GVDGISLF ++LT+LL  +C L +W++ ++  KE+++ F ++E+ L+  F  +DLL
Sbjct:  77 NCTFGVDGISLFLVLLTTLLFPLCLLGSWHSIQKRIKEYVVCFLIMEAFLICVFCVMDLL 136

Query: 140 LFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNI 199
           LFYIFFEGVLIP+F +IGI+GSR RKIRA+Y FFLYTL GSL +L+AIL I+ +TGTT+ 
Sbjct: 137 LFYIFFEGVLIPMFVLIGIWGSRERKIRAAYLFFLYTLFGSLFMLLAILYIFVKTGTTDY 196

Query: 200 NFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLG 259
             L +  F   +Q +LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG
Sbjct: 197 EILAHTTFSSFEQKILWLAFFASFATKVPMLPMHIWLPEAHVEAPTAGSVILAGILLKLG 256

Query: 260 GYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVI 319
            YGFLRFSLPLFP AS+Y++PL+YT++ + +IY S T +RQ DLK+I+AY+S+AH+  V+
Sbjct: 257 TYGFLRFSLPLFPEASYYFTPLVYTMATLGVIYTSFTAIRQTDLKRIIAYASVAHMNLVM 316

Query: 320 LGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVL 379
           +G+FSFN+ GLEG+LL  L HGFVSSALFLC+GVLYDRY TR++KYYSGL   +P+  V+
Sbjct: 317 MGLFSFNLPGLEGALLQSLSHGFVSSALFLCIGVLYDRYHTRMVKYYSGLVHVMPISMVI 376

Query: 380 LFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGN 439
           L FFT+ANIGLPGTS+F+GEF+IL+G+ QT+   T    +G+IL   Y LW YNR+ +GN
Sbjct: 377 LLFFTMANIGLPGTSSFVGEFLILVGIYQTNTTVTFLGATGMILGGGYSLWLYNRIAYGN 436

Query: 440 LKENYFKFLQ--DISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLT 489
           LK  Y    +  DISK EF A++PL++ TL+MG+YP +FL  +H+++  LLT
Sbjct: 437 LKTQYLGMTKFSDISKNEFFAVLPLIMGTLVMGIYPEVFLDPMHVSVNHLLT 488


ref|YP_003434218.1| NADH dehydrogenase subunit 4 [Chattonella marina]
dbj|BAI70565.1| NADH dehydrogenase subunit 4 [Chattonella marina]
(492 aa)

Score: 506 bits (1304), Expect: 7.17733e-141
Length: 472, Idn/Pos/Gap = 267/349/2 (56%/73%/0%)

Query:  20 LGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELI  79
           LG  I+   P      ++ F L +S   F+ ++ LW+ FD+S   FQFV++    +   I
Sbjct:  17 LGSFIVALWPSKYQQGMKIFGLTLSFFVFVCSLLLWVWFDQSTAKFQFVVNFPWFSSFNI  76

Query:  80 QYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLL 139
               GVDGISLF I+LT+LL  +C L +W + ++  KE+L+ F ++E+ L+  F  +DLL
Sbjct:  77 NCTFGVDGISLFLILLTTLLFPLCILGSWYSIQKRIKEYLLCFLLMEAFLICVFCVLDLL 136

Query: 140 LFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNI 199
           LFYIFFEGVLIP+F +IGI+GSR RKIRA+Y FFLYTL GSL +L+AIL I+ +TGTTN 
Sbjct: 137 LFYIFFEGVLIPMFVLIGIWGSRERKIRAAYLFFLYTLFGSLFMLLAILYIFVKTGTTNY 196

Query: 200 NFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLG 259
             L    F   +Q +LWLAFFASF  KVPM+PFHIWLPEAH EAPT GS+ILAG+LLKLG
Sbjct: 197 EILLTTSFSSFEQKVLWLAFFASFGTKVPMVPFHIWLPEAHVEAPTPGSVILAGLLLKLG 256

Query: 260 GYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVI 319
            YGFLRFSLPLFP ASFY++PL+YT++ + +IY S T +RQ DLK+I+AYSS+AH+  V+
Sbjct: 257 TYGFLRFSLPLFPEASFYFTPLVYTMATLGVIYTSFTAIRQSDLKRIIAYSSVAHMNLVM 316

Query: 320 LGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVL 379
           +G+FSFN+ GLEGSLL  L HGFVSSALFLC+G+LYDRY TR++KYYSGL   +PL  ++
Sbjct: 317 MGLFSFNLPGLEGSLLQSLSHGFVSSALFLCIGILYDRYHTRLVKYYSGLVHVMPLSMII 376

Query: 380 LFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGN 439
           L FFT+ANIGLPGTS+F+GEF+IL G+ QT+   T+   +G++L   Y LW YNRL +GN
Sbjct: 377 LLFFTMANIGLPGTSSFVGEFLILAGIYQTNTTVTLLGGTGMVLGGGYSLWLYNRLAYGN 436

Query: 440 LKENYFKFLQ--DISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLT 489
           LK  Y    +  DI K EF ++ PL+I TL+MGLYP IFL S+H++I +LLT
Sbjct: 437 LKTQYLGMTKFSDIKKNEFFSVFPLIIGTLVMGLYPEIFLDSMHMSINQLLT 488


gb|AEY83694.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepidogyna hodgsoniae]
(437 aa)

Score: 506 bits (1304), Expect: 7.86725e-141
Length: 435, Idn/Pos/Gap = 240/333/0 (55%/76%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F      FQFV + + L +  I +++G+DGISLFF+ILT+ L  +C
Sbjct:   2 SLITFLYSLFFWIRFANDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES L+  F ++DLL+FY+F E VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFLESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILPTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+I AGIL KLG YGF RFS+P+FP A+ +++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVISAGILSKLGTYGFSRFSIPMFPEATLHFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSAL LCVG LYDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALPLCVGALYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D +++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSPWLYNRVVFGNFKPNFILKFSDSNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


gb|AEY83675.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Apotreubia nana]
(437 aa)

Score: 506 bits (1303), Expect: 9.69201e-141
Length: 435, Idn/Pos/Gap = 237/334/0 (54%/76%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGISLFF+I T+ L  +C
Sbjct:   2 SLMTFLYSLFSWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVISTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ + + + Y KE++I FF+ ES  +    ++DLL+FY+FFE VLIP+F IIG++GSR 
Sbjct:  62 ILVGFYSVKSYKKEYMIAFFICESFPIAVSCSLDLLIFYVFFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           R+I+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RRIKAAYQFFLYTLMGSLSMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGIL KLG YGFLRFS+P+FP A+ Y++P I+
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEATLYFTPFIH 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+L +  HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILPMSSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSA F CVG LYDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSAPFPCVGALYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWPYNRVVFGNFKPNFILKFSDLNRREVLTFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


ref|YP_006666395.1| NADH dehydrogenase subunit 4 (mitochondrion) [Trebouxiophyceae sp. MX-AZ01]
gb|AFQ93750.1| NADH dehydrogenase subunit 4 (mitochondrion) [Trebouxiophyceae sp. MX-AZ01]
(490 aa)

Score: 506 bits (1303), Expect: 9.77322e-141
Length: 478, Idn/Pos/Gap = 263/355/7 (55%/74%/1%)

Query:  20 LGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILN----  75
           +G  +I+F+P     L R  +L IS LTFL+++ LWI FD S   FQFV S  + +    
Sbjct:  13 IGVFLILFVPSWNGKLARSIALTISVLTFLLSLLLWIQFDSSSGQFQFVSSFALTHHLPP  72

Query:  76 ---FELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNA 132
              +  +Q+ +GVDGISLFF+ILT+ LI VC L  W       KE+ I F ++E+LL+ A
Sbjct:  73 SGEYTTLQFVMGVDGISLFFVILTTFLIPVCILAGWTTIRTSMKEYCIAFLVLEALLIGA 132

Query: 133 FSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYF 192
           FS +DLLLFY+FFE VLIP+F IIG++GSR RKIRA+YQFFLYTL+GSLL+L+AILLIY 
Sbjct: 133 FSVLDLLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLVGSLLMLLAILLIYC 192

Query: 193 ETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILA 252
           +TGTT+++ LY   F + +++LLWLAFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILA
Sbjct: 193 QTGTTDLHILYATPFSKTREILLWLAFFASFAVKVPMLPVHIWLPEAHVEAPTAGSVILA 252

Query: 253 GILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSI 312
           GILLKLG YGFLRFS+PLFP AS +++PL+ TLSI+AIIY+SLTTLRQVDLKKI+AYSS+
Sbjct: 253 GILLKLGTYGFLRFSIPLFPDASIFFTPLVETLSILAIIYSSLTTLRQVDLKKIIAYSSV 312

Query: 313 AHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTF 372
           AH+ +V LG+F+ N  G+EG++ L+L HG VS ALFL +G LYDR+KTR+L+YY G    
Sbjct: 313 AHMNFVTLGLFALNPHGIEGAIFLMLAHGLVSPALFLLIGFLYDRHKTRLLRYYGGCARS 372

Query: 373 IPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFY 432
           +PLFA++   FT+ANI LPGT+NF+GEF++L+G  +++ +    + S ++L  +Y LW  
Sbjct: 373 MPLFAIMFLVFTMANISLPGTANFVGEFLVLVGAFRSNTLVATLAASTMVLGGAYALWLC 432

Query: 433 NRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           NRL++G  K  Y     D+S++EF  L+P +   L+MGL P+IFL  +  ++  +L  
Sbjct: 433 NRLLYGISKPYYLSAFADLSRREFFILVPFLFGVLVMGLAPDIFLDVMRCSVANVLQR 490


ref|YP_588294.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays]
ref|YP_740373.1| NADH dehydrogenase subunit 4 [Zea perennis]
ref|YP_740452.1| NADH dehydrogenase subunit 4 [Zea luxurians]
ref|YP_740400.1| NADH dehydrogenase subunit 4 [Zea mays subsp. parviglumis]
ref|YP_762511.1| NADH dehydrogenase subunit 4 [Tripsacum dactyloides]
gb|AAR91196.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays]
gb|ABE98683.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. mays]
gb|ABE98726.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. mays]
gb|ABE98772.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays]
gb|ABF70827.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea perennis]
gb|ABF70859.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. parviglumis]
gb|ABF70923.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea mays subsp. mays]
gb|ABG65650.1| NADH dehydrogenase subunit 4 (mitochondrion) [Zea luxurians]
gb|ABI74654.1| NADH dehydrogenase subunit 4 (mitochondrion) [Tripsacum dactyloides]
(495 aa)

Score: 506 bits (1302), Expect: 1.21409e-140
Length: 473, Idn/Pos/Gap = 252/345/0 (53%/72%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP + +  IR   L +S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSSIRPIRLIGLCVSLITFLYPPVPRIQFDPSTANSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    + KE++  F + E L++     +D
Sbjct:  79 NIHLYMGIDGLSLFFVILTTFLIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLSESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+LLW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+ G+ GS+LL+L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 319 VTIGMFSPNIPGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D++ +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLYKFSDLNGREVSIFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|NP_066468.1| NADH dehydrogenase subunit 4 [Rhodomonas salina]
gb|AAG17739.1|AF288090_15 NADH dehydrogenase subunit 4 [Rhodomonas salina]
(483 aa)

Score: 504 bits (1298), Expect: 4.20897e-140
Length: 472, Idn/Pos/Gap = 256/350/0 (54%/74%/0%)

Query:  17 FPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNF  76
           F L+G  ++I IP    VLI+  + + S  TF+I++ L + FD S   FQFV   ++L F
Sbjct:  12 FSLVGVFLVIIIPDKNKVLIKKSAFVCSVFTFVISLLLLLFFDSSSCKFQFVEWLELLIF  71

Query:  77 ELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTI 136
                F+GVDGIS+FFI+LT+ LI +C L+ W + ++  KE+ + F +I   L+  FS +
Sbjct:  72 FNFNLFIGVDGISIFFILLTTFLIPICLLVEWFSKKKNIKEYYVCFLLINIFLIVVFSVL 131

Query: 137 DLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGT 196
           D+L+FYIFFE +LIP+F +IGIFGS+TRKI+A+YQFFLYTLLGS+L+L++I LI+FE G+
Sbjct: 132 DILIFYIFFESILIPMFLVIGIFGSKTRKIKAAYQFFLYTLLGSVLMLLSIFLIFFEAGS 191

Query: 197 TNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILL 256
           T+   L +V F E+KQLLLWLAFF SFA+K+PM P HIWLPEAH EAPT+GS+ILAG+LL
Sbjct: 192 TDFQILLSVKFSEKKQLLLWLAFFISFAIKIPMFPLHIWLPEAHVEAPTAGSVILAGVLL 251

Query: 257 KLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIG 316
           K+G YGF+RFSL  FP AS ++ PLI+ LS++A++Y SLTTLRQVDLKKI+AYSS+AH+G
Sbjct: 252 KMGAYGFVRFSLTFFPIASVFFCPLIFVLSLLAVLYTSLTTLRQVDLKKIIAYSSVAHMG 311

Query: 317 YVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLF 376
            V +GIFSFN+ GLEGS L+++ HGFVSSALFL VG+LY+++ +R++KYY G+   +PL+
Sbjct: 312 LVTIGIFSFNLYGLEGSFLMMISHGFVSSALFLLVGMLYEKHHSRLIKYYGGIAQIMPLY 371

Query: 377 AVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLI 436
                FF++AN+G PGTS+F  EF+IL+G  Q +     FS+ G++ SA+YCLW  NRL+
Sbjct: 372 TFFFLFFSVANLGFPGTSSFCAEFLILLGAFQVNTFVATFSSLGMVFSAAYCLWLSNRLL 431

Query: 437 FGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           FG L+  Y     D+ KK+F  L PL   TL +G+YP IFL  IH +I  L+
Sbjct: 432 FGQLRVYYVSSYCDLQKKDFAILFPLSFFTLFLGVYPEIFLDYIHASISNLI 483


gb|AEY83720.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Symphyogyna brongniartii]
(437 aa)

Score: 503 bits (1294), Expect: 1.01078e-139
Length: 435, Idn/Pos/Gap = 237/329/0 (54%/75%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL ++  WI F+     FQFV + + L +  I +++G+DGI LFF++ T+ L  +C
Sbjct:   2 SLITFLHSLLFWIRFENDTAEFQFVETIRWLPYPNINFYIGIDGIPLFFVVPTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+  ++ + Y KE++I FF+ ESL +  F  +DLL+FY+ FE VLIP+F IIG++GSR 
Sbjct:  62 ILVGLHSVKGYKKEYMIAFFICESLPIAVFRPLDLLIFYVSFESVLIPMFIIIGVWGSRR 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GS  +L+AIL I+ +TGTT++  L   +F ER+Q+LLW+AFF SF
Sbjct: 122 RKIKAAYQFFLYTLMGSSFMLLAILSIFSQTGTTDLQILPTTEFSERRQILLWIAFFVSF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGIL KLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILPKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG  YDR+KTRILKYY GL + +P+F+ +  FF  AN+ LPGTS+F+GEF IL
Sbjct: 302 SSALFLCVGAPYDRHKTRILKYYGGLVSTMPIFSTIFLFFAPANMSLPGTSSFVGEFPIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N      D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWLYNRVVFGNFKPNSILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEY83719.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Symphyogyna brasiliensis]
(437 aa)

Score: 501 bits (1290), Expect: 3.44615e-139
Length: 435, Idn/Pos/Gap = 237/329/0 (54%/75%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL ++  WI F+     FQFV + + L +  I +++G+DGI LFF++LT+ L  +C
Sbjct:   2 SLITFLHSLLFWIRFENDTAEFQFVETIRWLPYPNINFYIGIDGIPLFFVVLTTFLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+  ++ + Y KE++I FF+ ESL +  F  +DLL+FY+ FE VLIP+F IIG++GSR 
Sbjct:  62 ILVGLHSVKGYKKEYMIAFFICESLPIAVFRPLDLLIFYVSFESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GS  +L+AI+ I+ +TGTT++      +F ER+Q+LL +AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSSFMLLAIVFIFSQTGTTDLQIXPTTEFSERRQILLXIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+I AGIL KLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVIPAGILPKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALFLCVG  YDR+KTRI KYY GL + +P+F+ +  FFTLAN+ LPGTS+FIGEF IL
Sbjct: 302 SSALFLCVGAPYDRHKTRIFKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSFIGEFPIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N      D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWLYNRVVFGNFKPNSILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 VGVIWMGVYPEVFLE 436


gb|AEK01315.1| nad4 [Arabidopsis thaliana]
(493 aa)

Score: 499 bits (1285), Expect: 1.17492e-138
Length: 473, Idn/Pos/Gap = 249/339/2 (52%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++  F + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E V IP+  IIG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT
Sbjct: 139 LLLFYVFPESVPIPMI-IIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTT 197

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 198 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 257

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
            G +GFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 258 FGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 317

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 318 VTIGMFS-NIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 376

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 377 TIFFSFTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 436

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 437 GNLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 489


ref|YP_006280852.1| NADH dehydrogenase subunit 4 (mitochondrion) [Cyanophora paradoxa]
gb|ADW79206.1| NADH dehydrogenase subunit 4 (mitochondrion) [Cyanophora paradoxa]
(483 aa)

Score: 498 bits (1283), Expect: 2.27132e-138
Length: 474, Idn/Pos/Gap = 263/362/2 (55%/76%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P++G I+I F+   +   I+   +  + +T  ++I LWI+F+  + Y Q VI+   +  E
Sbjct:  11 PIIGSILIFFLKSQRN--IKIVGITTTLITLFLSIILWIIFNNLFIYPQHVITINWIPIE  68

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
             Q  LGVDGISLFFIIL++ +I +C + +    ++  +EF I F ++ESLL+  FS+ D
Sbjct:  69 NFQPKLGVDGISLFFIILSTAIIPICLMASLQGIKKQLREFFICFLLLESLLILVFSSFD 128

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           L LFY+FFEGVLIP+F IIG++GSR RKIRA Y FFLYTL+GS+L+L+ I+ IY++TGTT
Sbjct: 129 LFLFYLFFEGVLIPMFLIIGVWGSRERKIRAGYYFFLYTLIGSVLMLLGIIWIYYKTGTT 188

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  LY + F E +QLLLWLAFF+SFAVKVPMIPFHIWLPEAH E+PT+GS++LAG+LLK
Sbjct: 189 DLTILYQIKFDETEQLLLWLAFFSSFAVKVPMIPFHIWLPEAHVESPTAGSLMLAGVLLK 248

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+PLFP AS Y++PLIYT+S+I IIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 249 LGTYGFLRFSIPLFPMASIYFTPLIYTMSLIGIIYGSLTTLRQIDLKKIIAYSSVAHMSF 308

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V LG+F  NVQ +EGS++L++ HG VS ALFL VG+LYDRY TR+L YYSGL   +P+FA
Sbjct: 309 VTLGLFGLNVQSIEGSIMLMISHGIVSPALFLLVGILYDRYHTRLLYYYSGLVHIMPIFA 368

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           +   FFT+ANI LPGTS+F+GEF+ L+G+ Q +    I +T GIIL A+Y LW  NR+IF
Sbjct: 369 LFFVFFTMANISLPGTSSFVGEFLSLLGVYQNNNSVAIIATLGIILGAAYALWLCNRIIF 428

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           G +K +Y  ++ DI+K+EF+ L+ L + T+ +G+YPNIF  S+H+++  L+T +
Sbjct: 429 GVIKIDYIGYIGDITKREFILLLILSLATIFIGIYPNIFFSSMHVSVSYLITQL 482


gb|AEY83723.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Metzgeria furcata]
(437 aa)

Score: 495 bits (1275), Expect: 1.84422e-137
Length: 435, Idn/Pos/Gap = 237/331/0 (54%/76%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DGIS FF+ILT+ L  + 
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISSFFVILTTFLTPIR  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+   + + Y KE++I FF+ ES  +  F ++DLL+FY+F E VLIP+F IIG++GSR 
Sbjct:  62 ILVGLYSVKSYEKEYMIAFFVRESFPIAVFCSLDLLIFYVFPESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HI LPEAH EAPT+GS+ILAGIL KLG YGFLRFS+P+FP A+ + +P IY
Sbjct: 182 SVKVPMVPVHIRLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEATLHSTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 VLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSAL LCVG  YDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALSLCVGAPYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFM 421

Query: 464 ILTLIMGLYPNIFLH 478
           +  + MG+YP +FL 
Sbjct: 422 LGVIWMGVYPEVFLE 436


ref|YP_203302.1| NADH dehydrogenase subunit 4 [Rhizopus oryzae]
gb|AAW49469.1| NADH dehydrogenase subunit 4 (mitochondrion) [Rhizopus oryzae]
(475 aa)

Score: 494 bits (1273), Expect: 3.4195e-137
Length: 471, Idn/Pos/Gap = 253/343/5 (53%/72%/1%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG   +I    N   L +  +L  S LTF++++ LW  FD +Y  FQFV S   +   
Sbjct:   9 PILGVFGVILSGENSF-LQKKVALASSLLTFVLSLVLWAGFDSNYNGFQFVSSFPTVT--  65

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
             Q  +GVDGISLFF++LT+ +I +C L +W + +   K FLI F ++E+LL+  F  +D
Sbjct:  66 -TQEVVGVDGISLFFVLLTTFIIPICILASWESVKTGIKYFLIAFLVLETLLIAVFVVLD 124

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFYI FE VLIP+F IIGI+G+R RKI A+YQFFLYTLLGSL +L+AIL+IYFE G+T
Sbjct: 125 LLLFYICFESVLIPMFLIIGIWGARERKIHAAYQFFLYTLLGSLFMLLAILVIYFEVGST 184

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +   L   D  E +Q +LWL FF SFAVKVPMIPFHIWLPEAH EA  +GSIILAGILLK
Sbjct: 185 DYQVLAVADISETRQKILWLGFFLSFAVKVPMIPFHIWLPEAHVEANLAGSIILAGILLK 244

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           L GYGFLR+S+ + P AS +++PL+Y+L++I+IIY+S TTLRQVDLKKI+AYSS+ H+  
Sbjct: 245 LAGYGFLRYSIAILPDASVFFTPLVYSLAVISIIYSSFTTLRQVDLKKIIAYSSVGHMNI 304

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
            +LG+FS  +QG+EGSL+L+L HG VS ALF+CV +LYDRY TR+LKYY GLT  +P+++
Sbjct: 305 TLLGLFSNTIQGIEGSLILMLAHGVVSPALFICVVILYDRYHTRLLKYYRGLTQHMPVWS 364

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           ++ F FTL NI +P ++NF+GEF+ L G  Q + + T+    G+ILSA+Y +W YNR  F
Sbjct: 365 IMFFLFTLGNIAVPLSANFVGEFMTLTGAFQQNPVLTVLGGLGMILSAAYGIWLYNRTAF 424

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           G  +  Y   + DI+++EFM L+PL+ L  +MGL+PN+FL  +H+ +  LL
Sbjct: 425 GA-QSKYLVPMGDINRREFMTLLPLLFLMFVMGLFPNLFLEPMHLAVSNLL 474


emb|CAC39484.1| NADH dehydrogenase subunit 4 [Bazzania trilobata]
(418 aa)

Score: 494 bits (1272), Expect: 3.90787e-137
Length: 416, Idn/Pos/Gap = 229/320/0 (55%/76%/0%)

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
           + L +  I +++G+DGISLFF+ILT+ L  +C L+  ++ + Y KE++I FF+ ES  + 
Sbjct:   3 RWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGLHSVKSYKKEYMISFFICESFPIA  62

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
              ++DLL+FY+F E VLIP+F IIG++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+
Sbjct:  63 VSRSLDLLIFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           F+TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+I 
Sbjct: 123 FQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVIS 182

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AGIL KLG YGFLRFS+P+FP A+ Y++P IY  S+IAIIY SLTT+RQ+DLKKI+AYS 
Sbjct: 183 AGILSKLGTYGFLRFSIPMFPEATLYFTPFIYAPSVIAIIYTSLTTIRQIDLKKIIAYSP 242

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           +AH+ +V +G+FS N+QG+EGS+LL+L HG VSSA FLC G LYDR+KTRI+KYY GL +
Sbjct: 243 VAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSAPFLCAGALYDRHKTRIVKYYGGLVS 302

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P+F+ +  FFT AN+ LPGTS+FIGEF+IL+G IQ + +    +  G+IL A+Y LW 
Sbjct: 303 TMPIFSTIFLFFTPANMSLPGTSSFIGEFLILVGAIQRNSLVAALAALGMILGAAYSLWL 362

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           YNR++FGN K N+     D++++E +  +P +   + MG+YP +F   +H ++  L
Sbjct: 363 YNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMGVYPEVFPECMHTSVSNL 418


ref|YP_173416.1| NADH dehydrogenase subunit 4 [Nicotiana tabacum]
(495 aa)

Score: 494 bits (1271), Expect: 4.93631e-137
Length: 473, Idn/Pos/Gap = 248/336/0 (52%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL    L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++  F + E +++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITAFLIREFIMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+  E VLIP+F IIG++GSR RKI+A+YQ FLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIALK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYTLS IAIIY S TTLRQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSSTTLRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +  HG VSSALFLCVGVLYDR+KTR+++YY G  + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMSSHGLVSSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR + 
Sbjct: 379 TIFFSSTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQH 491


ref|YP_002860278.1| NADH dehydrogenase subunit 4 [Megaceros aenigmaticus]
gb|ACC86801.1| NADH dehydrogenase subunit 4 [Nothoceros aenigmaticus]
(496 aa)

Score: 493 bits (1270), Expect: 6.77799e-137
Length: 474, Idn/Pos/Gap = 244/341/1 (51%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PLLG II++ IP +++ LIR   L    +TFL + +LWI FD S   FQFV S + L + 
Sbjct:  19 PLLGSIILLVIPDSRIQLIRSIGLRTFLITFLYSPFLWIEFDNSTAKFQFVESIRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I +++G+DGISL F++LT+ LI +  L+ W++ + Y KE++I F + ESL++      D
Sbjct:  79 NINFYIGIDGISLSFVVLTTFLIPIRILVGWSSTKSYKKEYMIAFLICESLMIAVSRMPD 138

Query: 138 LLLFYIFFEGVLIPIF-TIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGT 196
            LL ++F E V I +F  IIGI+GSR RKI+A+YQFFLYTLLGS+ +L+AI  I F+TGT
Sbjct: 139 PLLSHVFLESVSILMFLIIIGIWGSRQRKIQAAYQFFLYTLLGSVFMLLAISSISFQTGT 198

Query: 197 TNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILL 256
           T++  L   +F ER+Q+LL +AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGIL 
Sbjct: 199 TDLRILLTTEFSERRQVLLRIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILS 258

Query: 257 KLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIG 316
           KLG YGFLRFS+P+FP A+F++ P I TLS+IAIIY  LTT+RQ+DLKK++AYSS+AH+ 
Sbjct: 259 KLGTYGFLRFSIPMFPEATFFFIPFICTLSVIAIIYTPLTTVRQIDLKKMIAYSSVAHMN 318

Query: 317 YVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLF 376
           +V +G+FS N+QG+EGS+ L+L HG VS A   CVG LYDR+KTR++KYY GL + +P+F
Sbjct: 319 FVTIGMFSLNIQGIEGSISLMLSHGLVSLAPPPCVGALYDRHKTRLVKYYGGLVSTMPIF 378

Query: 377 AVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLI 436
             +  FFTLAN+ LPG+S+FIGEF I  G  + + +    +  G+IL A+Y    +NR++
Sbjct: 379 CTISLFFTLANMSLPGSSSFIGEFPIPTGAFERNSLVATLAALGMILGAAYSPRLHNRVV 438

Query: 437 FGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           FGN K N+ K   D +++E    +P ++  + MG+YP +FL  +H  +  L+ H
Sbjct: 439 FGNFKPNFLKKFSDSNRREVFIFLPFIVGVIRMGVYPEVFLECMHTCVSNLVQH 492


ref|YP_004237266.1| NADH dehydrogenase subunit 4 (mitochondrion) [Ricinus communis]
gb|ADW96030.1| NADH dehydrogenase subunit 4 (mitochondrion) [Ricinus communis]
(495 aa)

Score: 492 bits (1266), Expect: 2.05611e-136
Length: 473, Idn/Pos/Gap = 247/335/0 (52%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL +  L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I +F G+DGISLFF+ILT+ LI +C  + W+    Y KE++    + E L++  F  +D
Sbjct:  79 NIHFFFGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYT S IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLSSTPFIYTPSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF+I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TIFFSSTLANMSSPGTSSFIGEFLISVGAFQKNSVVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDSNGREVSIFIPFLVGVVWMGVHPKVFPDCMHTSVSNLVQH 491


gb|AEY83722.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Metzgeria frontipilis]
(437 aa)

Score: 492 bits (1266), Expect: 2.21645e-136
Length: 435, Idn/Pos/Gap = 235/329/0 (54%/75%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++ WI F+     FQFV + + L +  I +++G+DG+S FF+ILT+ L  + 
Sbjct:   2 SLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGVSSFFVILTTFLTPIR  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+   + + Y KE++I FF+ ES  +  F ++DLL+FY+F E VLIP+F IIG++G R 
Sbjct:  62 ILVCLYSVQSYEKEYMIAFFVRESFPIAVFCSLDLLIFYVFPESVLIPMFNIIGVWGFRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQ FLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQVFLYTLMGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HI LPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ + +P IY
Sbjct: 182 SVKVPMVPVHIRLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLHSTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 VLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSAL LCVG  YDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALSLCVGAPYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIWMGVYPEVFLE 436


ref|YP_002608215.2| NADH dehydrogenase subunit 4 [Carica papaya]
gb|ACB20504.2| NADH dehydrogenase subunit 4 (mitochondrion) [Carica papaya]
(495 aa)

Score: 491 bits (1263), Expect: 4.21385e-136
Length: 473, Idn/Pos/Gap = 247/334/0 (52%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + LG+DGISLFF+ILT+ LI +C  + W+    Y KE++    + E L++  F  +D
Sbjct:  79 NINFDLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+F E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+  +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSIPPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFSLTLANMSSPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDSNGREVSIFIPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|YP_006371388.1| NADH dehydrogenase subunit M [Tistrella mobilis KA081020-065]
gb|AFK53804.1| NADH dehydrogenase subunit M [Tistrella mobilis KA081020-065]
(507 aa)

Score: 490 bits (1262), Expect: 5.45773e-136
Length: 477, Idn/Pos/Gap = 239/339/4 (50%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIR---FFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G   I+ I  ++  + R     +L  S +TFLI++ LW  FD S   FQFV   +  
Sbjct:  14 PLIGAGFILLIRGDEATVARNARSVALWTSVITFLISLLLWTGFDSSTAAFQFVEKAEWF  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y LG+DGISL+F++LT+LLI +C L +W +  +  KE++I F  +E+L++ +F 
Sbjct:  74 PGYGIDYHLGIDGISLWFVLLTTLLIPICVLASWESITKRVKEYMIAFLAMETLIIGSFV 133

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY FFE +LIP+F IIGI+G + R+I AS++FFLYT+LGS+L+L+A+L +YF+ 
Sbjct: 134 ALDFVLFYFFFEAMLIPLFLIIGIWGGK-RRIYASFKFFLYTMLGSVLMLVALLYMYFQA 192

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q+ LWLA FASFAVK+PM P H WLP+AH EAPT+GS++LAGI
Sbjct: 193 GTTDIPTLMATPFGREAQIFLWLAMFASFAVKMPMWPVHTWLPDAHVEAPTAGSVLLAGI 252

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+ P AS Y++PLI+ LS++A++Y SL  L Q D+KK++AYSS+AH
Sbjct: 253 LLKVGGYGFLRFSLPMLPDASQYFAPLIFGLSMVAVVYTSLVALVQGDMKKLIAYSSVAH 312

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GI++FN QG+EGS++ +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 313 MGFVTIGIYTFNTQGIEGSIIQMLSHGLVSGALFLCVGVVYDRMHTRDIDRYGGLVNRMP 372

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A++  FFT+A+IGLPGTS F+GEF++L+G  Q +      + +G+IL A Y LW Y R
Sbjct: 373 GYALIFLFFTMASIGLPGTSGFVGEFLVLVGAFQANTWVAFIAATGVILGACYMLWLYRR 432

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG L     K + D++++E +A  PLV+LTL MG+YP  FL  I  ++  LLT +
Sbjct: 433 VVFGELVREDLKGILDMNRREVLAFAPLVVLTLWMGIYPETFLEPIRASVANLLTQV 489


gb|AEY83707.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Lophocolea cuspidata]
(437 aa)

Score: 490 bits (1262), Expect: 6.23721e-136
Length: 433, Idn/Pos/Gap = 234/327/0 (54%/75%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++  I F+     FQFV + + L +  I +++G+DGISLFF+I T+ L   C
Sbjct:   2 SLITFLYSLFFRIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVISTTFLTPNC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+ +++   Y KE++I FF+ ES L+  F ++DLL+FY+F E VL P+  IIG++GSR 
Sbjct:  62 ILVGFSSVRGYKKEYMIAFFICESFLIAVFRSLDLLIFYVFSESVLNPMVIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
            KI+A+Y FFLYTL+GSL +L+AIL I+F+TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 WKIKAAYHFFLYTLIGSLFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
            LS+IAIIY SLTT+RQ+DLKKI+AYS +AH+ +V +G+FS N+QG+EGS+L +L HG V
Sbjct: 242 ALSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSLNIQGIEGSILPMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSALF CVG  YDR+KTRI+KYY GL + +P+F+ +  F T AN+ LPGTS+FIGEF+IL
Sbjct: 302 SSALFSCVGAPYDRHKTRIVKYYGGLVSTMPIFSTISLFPTPANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVAALAALGMILGAAYSLWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIF 476
              + MG+YP +F
Sbjct: 422 AGVIWMGVYPEVF 434


ref|YP_005090410.1| nad4 gene product (mitochondrion) [Boea hygrometrica]
gb|AEK53299.1| NADH dehydrogenase subunit 4 (mitochondrion) [Boea hygrometrica]
(492 aa)

Score: 490 bits (1261), Expect: 7.18774e-136
Length: 473, Idn/Pos/Gap = 247/333/0 (52%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL    L I FD S    QFV S + L +E
Sbjct:  16 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVLRIQFDPSTAKSQFVESLRWLPYE  75

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    + E +++  F  +D
Sbjct:  76 NINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFIMIAVFCMLD 135

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+  IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 136 PLLFYVLPESVPIPMLIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 195

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 196 DLQISLTTEFSERRQMFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 255

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYT S IAIIY S TTLRQ+DLKKI+AYSS+AH+  
Sbjct: 256 LGTYGFLRFSIPMFPEATLCSTPFIYTPSAIAIIYTSSTTLRQIDLKKIIAYSSVAHMNL 315

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +  HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F 
Sbjct: 316 VTIGMFSRNIQGIGGSILPMSSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFP 375

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR + 
Sbjct: 376 TIFFSSTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVS 435

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   IH ++  L+ H
Sbjct: 436 GNLKPDFLHKFSDPNGREVSIFIPFIVGLVWMGVHPKVFPDCIHTSVSNLVQH 488


ref|YP_007317116.1| NADH dehydrogenase subunit 4 (mitochondrion) [Nannochloropsis gaditana]
gb|AFZ64332.1| NADH dehydrogenase subunit 4 (mitochondrion) [Nannochloropsis gaditana]
(525 aa)

Score: 490 bits (1261), Expect: 7.49394e-136
Length: 489, Idn/Pos/Gap = 249/350/25 (50%/71%/5%)

Query:  17 FPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNF  76
           FPL G  +I ++P  Q  L++  +LIIS +TFL ++ LW+ F++S   FQF+        
Sbjct:  40 FPLFGSFVIAWLPNEQKTLMKSLALIISGITFLFSLALWVNFNKSLSKFQFI--------  91

Query:  77 ELIQYF------------LGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFM 124
           E + Y+            LGVDGISLFF+ILT+LLIFVC L +W+    + KE+L+ F +
Sbjct:  92 ETVHYWFPWDSNSSTYVLLGVDGISLFFVILTTLLIFVCLLSSWDNIHIHLKEYLLTFLI 151

Query: 125 IESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLIL 184
           +ESLLL  F  +DLL+FYI FE  LIP+F +I  +GSR RKIRA+   FLYTL GS+ +L
Sbjct: 152 LESLLLGVFIILDLLMFYILFEATLIPMFIMILTWGSRERKIRAATMLFLYTLFGSVFML 211

Query: 185 IAILLIYFETGTTNINFLY-NVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEA 243
             I+ IY+  G+T+   +  +  F   +Q LLWL+FF SFA KVPM+P HIWLPEAH EA
Sbjct: 212 AGIIYIYWTVGSTDYQIVVASAQFTSFEQRLLWLSFFLSFATKVPMLPVHIWLPEAHVEA 271

Query: 244 PTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDL 303
           PT+GS+ILAGILLKLG YGFLRFSLPLF  A+FY++PL+Y+++++ +IY SLT +RQ D 
Sbjct: 272 PTAGSVILAGILLKLGSYGFLRFSLPLFSEANFYFTPLVYSIAVLGVIYTSLTAIRQTDF 331

Query: 304 KKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRIL 363
           K+I+AY+S+AH+  V++GI+SFN+ GL GS+L  + HGFVSSALFL +GV+YDR+ TR++
Sbjct: 332 KRIIAYTSVAHMNIVMIGIYSFNLIGLGGSILQSISHGFVSSALFLIIGVVYDRFHTRLI 391

Query: 364 KYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIIL 423
           KYYSGL   +PL+A++  FFT+ANI LPGTS+F+GEF+IL G  + +   T    +G+IL
Sbjct: 392 KYYSGLVHIMPLYALIFLFFTMANIALPGTSSFVGEFLILAGSFKENTTVTFLGATGMIL 451

Query: 424 SASYCLWFYNRLIFGNLKEN----YFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHS 479
             +Y LW YNR+I+GNLK++    + K+  DI+++EF   +PL+I T++MG+YP IFL  
Sbjct: 452 GGAYSLWLYNRVIYGNLKKDEGHLHLKYSYDINRREFYVFLPLIIGTILMGIYPKIFLDP 511

Query: 480 IHITILRLL 488
           +  ++L L+
Sbjct: 512 LEASLLNLV 520


ref|YP_006666111.1| NADH dehydrogenase subunit 4 (mitochondrion) [Malus x domestica]
emb|CBX33372.1| NADH dehydrogenase subunit 4 (mitochondrion) [Malus x domestica]
(495 aa)

Score: 489 bits (1260), Expect: 9.23212e-136
Length: 473, Idn/Pos/Gap = 247/333/0 (52%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++    + E L++  F  +D
Sbjct:  79 NINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQILLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYT S IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCSTPFIYTSSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR+KTR+++YY G  + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF IL+G  Q + +    +  G+IL A+Y LW YNRL+ 
Sbjct: 379 TISFSSTLANMSSPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRLVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKADFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|YP_003359451.1| NADH dehydrogenase subunit 4 [Synedra acus]
gb|ACX62000.1| NADH dehydrogenase subunit 4 [Synedra acus]
(499 aa)

Score: 489 bits (1259), Expect: 1.21586e-135
Length: 474, Idn/Pos/Gap = 249/341/2 (52%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+L   ++  IP N   +++  +L  + + FL+++   I FD+    FQ   + + L+F 
Sbjct:  26 PILSIFLVFLIPSNYTYVLKDIALKSTCVVFLLSLSCLIFFDKREGAFQMKFNFRWLDFV  85

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            +    GVDGIS+FFIILT+LLI +C L+NW+ +    K  LI F ++E LL+N FS +D
Sbjct:  86 NMNLNFGVDGISIFFIILTTLLIMLCVLVNWDTSSL--KINLICFLVLEFLLVNVFSILD 143

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LL FYIFFE VLIP+F IIGI+GSR R+IRASY  FLYT+LGS+L+LIAIL IY + GTT
Sbjct: 144 LLFFYIFFESVLIPMFLIIGIWGSRQRRIRASYFLFLYTVLGSILMLIAILYIYVQVGTT 203

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           N   L    F   +Q +LW+ FF SFA K+PMIP H+WLPEAH EAPTSGS+ILAGILLK
Sbjct: 204 NYEILLTFRFSTLEQYILWIVFFLSFATKIPMIPTHLWLPEAHVEAPTSGSVILAGILLK 263

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFSLPLFP ASFY+SP+IYT++ I II+AS T +RQ D K+I+AY+S+AH+  
Sbjct: 264 LGSYGFLRFSLPLFPEASFYFSPMIYTIASIGIIFASFTAIRQTDFKRIIAYTSVAHMNL 323

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V+LGIFSFN  GL GS++  L HGFV+SALFL +GV+YDR+ +R++KYY GL   +P+++
Sbjct: 324 VVLGIFSFNAIGLAGSIIQSLSHGFVASALFLLIGVVYDRHGSRMVKYYGGLVHVMPMYS 383

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            +  FFT+ANIGLPGTS+F+GEF+ILIG  + +   T+   + +I+   Y LW +NR+I+
Sbjct: 384 TIFLFFTMANIGLPGTSSFVGEFLILIGSFKFNTTVTVLGATSMIIGGCYSLWLFNRVIY 443

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           GNLK  Y     D++KK+    +PL+  T ++G++PNIFL  I ++ L+L  +I
Sbjct: 444 GNLKTQYINNFSDLTKKDLFVFMPLLSCTFLLGIFPNIFLCVIQMSTLKLTEYI 497


ref|YP_448666.1| NADH dehydrogenase subunit 4 [Desmarestia viridis]
gb|AAS79052.1| NADH dehydrogenase subunit 4 (mitochondrion) [Desmarestia viridis]
(482 aa)

Score: 488 bits (1257), Expect: 2.49181e-135
Length: 468, Idn/Pos/Gap = 248/341/4 (52%/72%/0%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQ  80
           G + ++FIP +Q +++R F+L I+S  F+ +++LW+ FD+S   FQFVI    L    I 
Sbjct:  13 GIVGLVFIPSSQKLIMRQFALGITSAVFVFSLFLWLGFDQSTSKFQFVIDSLWLPLANIN  72

Query:  81 YFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLL 140
             LGVDGISLFFIILT+L+  +C L +W+ ++   K +LI F  +E +LL  F+ +DLL 
Sbjct:  73 LILGVDGISLFFIILTTLIFPLCLLASWSFDKGSVKSYLISFLSMELVLLLVFTNLDLLF 132

Query: 141 FYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNIN 200
           FYIFFE VLIP+F +IGI+GSR RKIRA+Y FFLYTLLGSL +LI ++ IY   GTT+  
Sbjct: 133 FYIFFETVLIPMFLVIGIWGSRQRKIRAAYMFFLYTLLGSLFMLIGVVYIYLFAGTTDYE 192

Query: 201 FLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGG 260
            L  V F    Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG 
Sbjct: 193 ALSVVGFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGS 252

Query: 261 YGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVIL 320
           YGFLRFSL L P AS Y++PL+++LS+  ++Y SLT +RQ DLK+++AY+S+AH+  V++
Sbjct: 253 YGFLRFSLGLLPLASVYFTPLVFSLSLFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMI 312

Query: 321 GIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLL 380
           G+F+  V G+E +LL  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +P+F  + 
Sbjct: 313 GLFTGTVIGIEAALLQSLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFITIF 372

Query: 381 FFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNL 440
            FFT+AN+GLPGTS+F+GEF++L+   + +  A  F+ + +IL   Y LW +NR+ +GN+
Sbjct: 373 LFFTMANLGLPGTSSFVGEFLLLVSAFEANTTACFFAATSMILGGGYSLWLFNRIAYGNV 432

Query: 441 KENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           K   F    D+S +EF+  +PLVI TL+MG+YP+IF   +H T+  L+
Sbjct: 433 KIVGF----DLSFREFVLFLPLVIGTLVMGIYPHIFFSPMHATVSNLV 476


ref|YP_004222811.1| NADH dehydrogenase subunit 4 [Vigna radiata]
gb|ADO19877.1| NADH dehydrogenase subunit 4 [Vigna radiata]
(495 aa)

Score: 488 bits (1256), Expect: 2.7773e-135
Length: 473, Idn/Pos/Gap = 242/329/0 (51%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG II IFIP +++  IR   L  S +TFL +    I FD S    QFV S + L +E
Sbjct:  19 PVLGSIIPIFIPNSRIRPIRLIGLCASLITFLYSPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I   LG+DG+S FF+ILT+ LI +C L+ W+    Y KE++    + E L++  F  +D
Sbjct:  79 NINLNLGIDGLSFFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E VLIP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI F+TGT 
Sbjct: 139 PLLFYVLPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILFQTGTA 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FA+FAVKVPM+P HIWLPEAH EAPT+GS+ILAGI  K
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFAAFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPSK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+FP A+   +P IYT S IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTHGFLRFSIPMFPEATLCSTPFIYTPSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+  +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSIPPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFSSTLANMSSPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H  +  L+ H
Sbjct: 439 GNLKADFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDRMHTYVSNLVQH 491


gb|ABS50628.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
gb|ABS50630.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana]
(447 aa)

Score: 487 bits (1254), Expect: 5.28011e-135
Length: 441, Idn/Pos/Gap = 240/320/0 (54%/72%/0%)

Query:  36 IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIIL  95
           IR   L  S +TFL +    I FD S    QFV S + L +E I ++LG+DGISLFF+IL
Sbjct:   5 IRLIGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYENINFYLGIDGISLFFVIL  64

Query:  96 TSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTI 155
           T+ LI +C  + W+    Y KE++  F + E L++  F  +DLLLFY+F E V IP+F I
Sbjct:  65 TTFLIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLDLLLFYVFPESVPIPMFII 124

Query: 156 IGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLL 215
           IG++GSR RKI+A+YQFFLYTLLGSL +L+AILLI F+TGTT++      +F ER+Q+ L
Sbjct: 125 IGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTTDLQISLTTEFSERRQIFL 184

Query: 216 WLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYAS 275
           W+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK G +GFLRFS+P+FP A+
Sbjct: 185 WIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKFGTHGFLRFSIPMFPEAT 244

Query: 276 FYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLL 335
              +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  V +G+FS N+QG+ GS+L
Sbjct: 245 LCSTPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSIL 304

Query: 336 LILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSN 395
            +L HG V SALFLCVGVLYDR+KTR+++YY GL + +P  + + F FTLAN+  PGTS+
Sbjct: 305 PMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTIFFSFTLANMSSPGTSS 364

Query: 396 FIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKE 455
           FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ GNLK ++     D + +E
Sbjct: 365 FIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDSNGRE 424

Query: 456 FMALIPLVILTLIMGLYPNIF 476
               IP ++  + MG++P +F
Sbjct: 425 VSIFIPFLVGVVRMGVHPKVF 445


gb|AEY83710.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Plagiochila asplenioides]
(410 aa)

Score: 486 bits (1252), Expect: 7.43383e-135
Length: 403, Idn/Pos/Gap = 227/314/0 (56%/77%/0%)

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L +  I +++G+DGISLFF+I T+ L  +C L+ + +   Y KE++I FF+ ES L+   
Sbjct:   5 LPYPNINFYIGIDGISLFFVISTTFLTPICILVGFYSVGSYKKEYMIAFFIRESFLIAVS  64

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
            ++D L+FY+FFE VLIP+F I G++GSR RKI+A+YQFFLYTL+GSL +L+AIL I+F+
Sbjct:  65 RSLDPLIFYVFFESVLIPMFIITGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQ 124

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
           TGTT++  L   +F ER+Q+LLW+AFFASF+VKVPM+P HIWLPEAH EAPT+GS+ILAG
Sbjct: 125 TGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAG 184

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           IL KLG YGF RFS+P+FP A+ Y++P IY LS+IAIIY SLTT+RQ+DLKKI+AYSS+A
Sbjct: 185 ILSKLGTYGFSRFSIPMFPEATLYFTPFIYALSVIAIIYTSLTTIRQIDLKKIIAYSSVA 244

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+ +V +G+FS N+QG+EG++LL+L HG VSSALFLCVG  YDR+KTRI+KYY GL + +
Sbjct: 245 HMNFVTIGMFSPNIQGIEGNILLMLSHGLVSSALFLCVGAPYDRHKTRIVKYYGGLVSTM 304

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P+ + +  FFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YN
Sbjct: 305 PISSTISLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVAALAALGMILGAAYSLWLYN 364

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIF 476
           R++FGN K N+     D++++E +  +P +   + MG+YP +F
Sbjct: 365 RVVFGNSKPNFILKFSDLNRREVLIFLPFIAGVIRMGVYPEVF 407


ref|YP_004849354.1| NADH dehydrogenase subunit 4 [Cucumis sativus]
gb|ADZ10782.1| NADH dehydrogenase subunit 4 [Cucumis sativus]
(495 aa)

Score: 486 bits (1251), Expect: 1.18614e-134
Length: 473, Idn/Pos/Gap = 245/332/0 (51%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL      I FD S    QFV S + L + 
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I + LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    +   L++  F  +D
Sbjct:  79 NINFSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIRSFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVLPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTHGFLRFSIPIFPEATLCATPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR+KTR+++YY G  + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+ LPGTS+FIGEF I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFSFTLANMSLPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNCKPDFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDHMHTSVSNLVQH 491


ref|YP_448706.1| NADH dehydrogenase subunit 4 [Dictyota dichotoma]
gb|AAS79091.1| NADH dehydrogenase subunit 4 (mitochondrion) [Dictyota dichotoma]
(480 aa)

Score: 485 bits (1249), Expect: 1.7704e-134
Length: 464, Idn/Pos/Gap = 242/343/4 (52%/73%/0%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQ  80
           G   ++ IP NQ ++++  SL  +S+ F+I++ LW+ FD+S   FQFV+    L    I 
Sbjct:  13 GVGFLLIIPDNQKLILKQVSLGCTSVVFVISLLLWVGFDQSTSKFQFVVDGLWLPVANIN  72

Query:  81 YFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLL 140
             LGVDGISLFF+ILT+L+  +C L +W +     K FLI F ++E +L+  F+++DL+L
Sbjct:  73 VILGVDGISLFFVILTTLIFPLCILSSWFSINVGVKSFLISFMLMEFVLILVFTSLDLVL 132

Query: 141 FYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNIN 200
           FYIFFE VLIP+F +IG++GSR RK+RA+Y FFLYTL GSLL+LIA++ IY  +GT+N  
Sbjct: 133 FYIFFETVLIPMFLVIGVWGSRQRKVRAAYLFFLYTLFGSLLMLIAVIYIYHFSGTSNYE 192

Query: 201 FLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGG 260
            L  ++F E  Q  LWLAFFASFA KVPM+PFHIWLPEAH EAPT+GS+ILAGILLKLG 
Sbjct: 193 ILSTIEFSEYSQRWLWLAFFASFAAKVPMLPFHIWLPEAHVEAPTAGSVILAGILLKLGS 252

Query: 261 YGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVIL 320
           YGFLRFS  LFP AS Y++P I++LS++ ++Y SLT +RQ DLK++VAY+S+AH+  V++
Sbjct: 253 YGFLRFSWGLFPEASVYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLVAYTSVAHMNLVVI 312

Query: 321 GIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLL 380
           G+F+ ++ G+E +LL  L HGFVSSALFL +GVLYDR+ +R++KYYSGL   +P+F ++ 
Sbjct: 313 GLFTGSILGVEAALLQSLSHGFVSSALFLIIGVLYDRWHSRVVKYYSGLVHSMPVFIIVF 372

Query: 381 FFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNL 440
            FFT+AN+GLPGTS+F+GEF++L+   + +  A  F+ + ++L  +Y LW +NR+ +GN 
Sbjct: 373 LFFTMANLGLPGTSSFVGEFLLLLSAFEANSTACFFAATSMVLGGAYSLWLFNRVAYGNA 432

Query: 441 KENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
           K        DIS +EF+  +PL++ TLIMG+YPN+FL  +H  +
Sbjct: 433 K----LIGLDISLREFVLFLPLILGTLIMGIYPNVFLQPMHAAV 472


ref|YP_316594.1| NADH dehydrogenase subunit 4 [Thalassiosira pseudonana]
gb|AAZ99401.1| NADH dehydrogenase subunit 4 [Thalassiosira pseudonana]
(498 aa)

Score: 485 bits (1248), Expect: 2.23632e-134
Length: 473, Idn/Pos/Gap = 248/354/2 (52%/74%/0%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQ  80
           G  +++F+P +    ++  +L  S   ++I+++LW+ F++S   FQFV     + F  + 
Sbjct:  23 GTFLLLFVPSSNHSALKAIALNTSCFLYVISLFLWVFFNKSIGSFQFVSKLLWIPFLNLN  82

Query:  81 YFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLL 140
           + LG+DGISLFFI+LT+LLIF+C L++WN+ +   KEFLI F ++E  L+  FS +DLLL
Sbjct:  83 FSLGIDGISLFFILLTTLLIFLCILISWNSVKTNIKEFLIAFLVMEFFLIGVFSILDLLL 142

Query: 141 FYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNIN 200
           FYI+FE VLIP++ I+GI+GSR RKIRA+Y FFLYTLLGS+L+L++IL IY++ GTT+  
Sbjct: 143 FYIYFESVLIPMYLIVGIWGSRERKIRAAYFFFLYTLLGSVLMLLSILYIYYQVGTTDYE 202

Query: 201 FLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGG 260
            L    F + +Q  LWL+FF SFA KVPM+P H+WLPEAH EAPT+GS+ILAG+LLKLG 
Sbjct: 203 VLLTFIFSKTEQKFLWLSFFGSFATKVPMVPVHLWLPEAHVEAPTAGSVILAGVLLKLGT 262

Query: 261 YGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVIL 320
           YGFLRFS PLFP ASFY++P++Y LS++ I+Y S T +RQ D K+I+AY+S+AH+  V++
Sbjct: 263 YGFLRFSFPLFPEASFYFAPIVYLLSVVGIVYTSFTAIRQTDFKRIIAYTSVAHMNLVMV 322

Query: 321 GIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLL 380
           G+FSFN  GLEG++L  L HGFV+SALFL +GV+Y+R+ TR++KYY GL   +PL+  + 
Sbjct: 323 GLFSFNTIGLEGAILQSLSHGFVASALFLIIGVVYERHHTRMVKYYGGLVHVMPLYTFIF 382

Query: 381 FFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNL 440
            FFT++NIGLPGT +F+GEF+IL+G  +T+  AT  S +G+I+   Y LW +NR+ +GNL
Sbjct: 383 LFFTMSNIGLPGTGSFVGEFLILVGSFKTNTSATFISATGMIIGGCYSLWLFNRISYGNL 442

Query: 441 KENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL--LTHI 491
           K  Y K   DI+K+EF   +PL+  T+ +GLYP IFL+S+H+++  L  +THI
Sbjct: 443 KTQYLKDYIDINKREFFIFLPLIFGTIAIGLYPEIFLNSMHMSVNMLVEITHI 495


gb|AEY83716.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Fossombronia pusilla]
(437 aa)

Score: 483 bits (1242), Expect: 1.35594e-133
Length: 435, Idn/Pos/Gap = 233/321/0 (53%/73%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +T L ++  WI F+     FQFV + + L +  I +++G+DGIS   +ILT+ L  +C
Sbjct:   2 SLITPLYSLSFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISSSSVILTTSLTPIC  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
             + + +   Y KE++I FF+ ES  +  F   DLL+FY+F E VLIP+F IIG++GSR 
Sbjct:  62 IPVGFYSVRSYKKEYMIAFFICESFPIAVFCPPDLLIFYVFLESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+YQFFLYTL+GSL +L+AIL I F+TGTT+   L   +F ER+Q+LLW+AFFASF
Sbjct: 122 RKIKAAYQFFLYTLMGSLFMLLAILFISFQTGTTDPQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HI LPEAH +APT+GS+I AGILLK G YGFLRFS+P+FP A+ Y++P IY
Sbjct: 182 SVKVPMVPVHIRLPEAHVDAPTAGSVIPAGILLKSGTYGFLRFSIPMFPEATPYFTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           TLS+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 TLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSSNIQGIEGSILLMLSHGPV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSA FLCVG LYDR+KTRI+KYY GL + +P+ + +  F TLAN+ LPGTS+ IGEF IL
Sbjct: 302 SSAPFLCVGALYDRHKTRIVKYYGGLVSTMPISSTIFSFPTLANMSLPGTSSSIGEFPIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWLYNRVVFGNFKPNFILKFSDLNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIRMGVYPEVFLE 436


ref|YP_006460174.1| NADH dehydrogenase subunit 4 (mitochondrion) [Mimulus guttatus]
gb|AEK26521.1| NADH dehydrogenase subunit 4 (mitochondrion) [Mimulus guttatus]
(492 aa)

Score: 481 bits (1239), Expect: 2.41142e-133
Length: 473, Idn/Pos/Gap = 243/329/0 (51%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL    L I FD S    QFV S + L +E
Sbjct:  16 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPALRIQFDPSTAKSQFVESLRWLPYE  75

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I   LG+DGISLF +ILT+ LI +C L+ W+    Y KE++    + E  ++  F  +D
Sbjct:  76 NINLDLGIDGISLFCVILTTFLIPICILVGWSGMRSYGKEYITASLIRECGMIAVFCILD 135

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            +LFY+F E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 136 SILFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 195

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FA+FAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 196 DLQISLTTEFSERRQIFLWIASFAAFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 255

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYT S IAIIY S TTLRQ+DLKKI+AYSS+AH+  
Sbjct: 256 LGTYGFLRFSIPMFPEATLCSTPFIYTPSAIAIIYTSSTTLRQIDLKKIIAYSSVAHMNL 315

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +  HG VSSALFLCVGVLYDR+KTR+++YY G  + +P   
Sbjct: 316 VTIGMFSPNIQGIGGSILPMSSHGLVSSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLP 375

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR + 
Sbjct: 376 TIFFSSTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVS 435

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 436 GNLKPDFLHKFSDPNGREVSIFIPFLVGVVWMGVHPKVFPDCMHTSVSNLVQH 488


gb|AEY83717.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Noteroclada confluens]
(430 aa)

Score: 481 bits (1239), Expect: 2.49326e-133
Length: 424, Idn/Pos/Gap = 228/314/0 (53%/74%/0%)

Query:  55 WILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEY 114
           WI F+     FQFV + + L +  I +++G+DGI  FF+ILT+ L  +C L+ + + + Y
Sbjct:   6 WIRFENDTAKFQFVETIRWLPYSNINFYIGIDGIPSFFVILTTFLTPICILVGFYSVKSY  65

Query: 115 NKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFL 174
            KE++I FF+ ES  +  F   D L+FY+F E VLIP+F IIG++GSR RKI+A+YQFFL
Sbjct:  66 KKEYMIAFFICESFPIAVFRPPDPLIFYVFLESVLIPMFIIIGVWGSRQRKIKAAYQFFL 125

Query: 175 YTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHI 234
           YTL+GSL +L+AIL I F+TGTT++  L   +F ER+Q+LL +AFFASF+VKVPM+P HI
Sbjct: 126 YTLMGSLFMLLAILFISFQTGTTDLQILLTTEFSERRQILLRIAFFASFSVKVPMVPVHI 185

Query: 235 WLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYAS 294
           WLPEAH EAPT+GS+  AGIL KLG YGFLRFS+P+FP A+ +++P IYT S+IAIIY S
Sbjct: 186 WLPEAHVEAPTAGSVTPAGILSKLGTYGFLRFSIPMFPEATLHFTPFIYTPSVIAIIYTS 245

Query: 295 LTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVL 354
           LTT+RQ+DLKKI AYSS+AH+ +V +G+FS N+QG+EGS+ L+L HG VSSALFLCVG L
Sbjct: 246 LTTIRQIDLKKITAYSSVAHMNFVTIGMFSLNIQGIEGSIPLMLSHGPVSSALFLCVGAL 305

Query: 355 YDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIAT 414
           YDR+KTRI+KYY GL + +P+ + +  F T AN+ LPGTS+FIGEF I +G  Q + +  
Sbjct: 306 YDRHKTRIVKYYGGLVSTMPISSTIFLFSTPANMSLPGTSSFIGEFPISVGAFQRNSLVA 365

Query: 415 IFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPN 474
             +  G+IL A+Y  W YNR++FGN K N+     D++++E +  +P +   + MG+YP 
Sbjct: 366 TLAALGMILGAAYSPWLYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMGVYPE 425

Query: 475 IFLH 478
           +FL 
Sbjct: 426 VFLE 429


gb|AEN56120.1| NADH dehydrogenase subunit 4 [Cucumis melo subsp. melo]
(495 aa)

Score: 481 bits (1239), Expect: 2.71021e-133
Length: 473, Idn/Pos/Gap = 244/331/0 (51%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL      I FD S    QFV S + L + 
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I   LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    +   L++  F  +D
Sbjct:  79 NINLSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIRSFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+L+L+AILLI  +TGTT
Sbjct: 139 PLLFYVLPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVLMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+FP A+   +P IYTLS IAIIY SLTT RQ+DLKKI+AYSS+AH+  
Sbjct: 259 LGTHGFLRFSIPIFPEATLCATPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG V SALFLCVGVLYDR++TR+++YY G  + +P  +
Sbjct: 319 VTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHQTRLVRYYGGSVSTMPNLS 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F FTLAN+ LPGTS+FIGEF I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFSFTLANMSLPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNCKPDFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDHMHTSVSNLVQH 491


ref|YP_006291798.1| nad4 gene product (mitochondrion) [Daucus carota subsp. sativus]
gb|AEY81206.1| NADH dehydrogenase subunit 4 (mitochondrion) [Daucus carota subsp. sativus]
(495 aa)

Score: 481 bits (1238), Expect: 3.94519e-133
Length: 473, Idn/Pos/Gap = 242/328/0 (51%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL    L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C  + W+    Y KE++    + E L++  F  +D
Sbjct:  79 NIHFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+F E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++      +F ER+Q+ LW+A FASFAVKVPM+P HIW PEAH EAPT+GS+ILAGI LK
Sbjct: 199 DLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWSPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+   +P IYT S IAIIY S TTLRQ+DLKKI+AYS +AH+  
Sbjct: 259 LGTYGFLRFSIPMFPEATLCSTPFIYTSSAIAIIYTSSTTLRQIDLKKIIAYSPVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+  +  HG V SALFLCVGVLYDR+KTR+++YY G  + +P   
Sbjct: 319 VTIGMFSRNIQGIGGSIPPMSSHGLVPSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLP 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR + 
Sbjct: 379 TIFFSSTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDPNGREVSIFIPFLVGLVRMGVHPKVFPDRMHTSVSNLVQH 491


ref|YP_003288827.1| NADH dehydrogenase subunit 4 [Saccharina angustata]
dbj|BAI48692.1| NADH dehydrogenase subunit 4 [Saccharina angustata]
(482 aa)

Score: 480 bits (1236), Expect: 6.34768e-133
Length: 468, Idn/Pos/Gap = 247/342/4 (52%/73%/0%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQ  80
           G + +IFIP +Q +++R F+L I+S  F+ +++LW+ FD S   FQFV+    L    I 
Sbjct:  13 GIVGLIFIPSSQKLIMRQFALGITSAVFVSSLFLWLGFDHSTPKFQFVVDSLWLPIANIN  72

Query:  81 YFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLL 140
             LGVDGISLFF+ILT+L+  +C L +W+ ++   K +LI F  +E +LL  F+ +DLL 
Sbjct:  73 LILGVDGISLFFVILTTLIFPLCLLASWSFDKGEVKTYLISFLGMELVLLLVFTNLDLLF 132

Query: 141 FYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNIN 200
           FYIFFE VLIP+F +IGI+GSR RKIRA+Y FFLYTLLGSL +LI I+ IY   G+TN  
Sbjct: 133 FYIFFEAVLIPMFLVIGIYGSRERKIRAAYMFFLYTLLGSLFMLIGIVYIYLFAGSTNYE 192

Query: 201 FLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGG 260
            L  ++F    Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG 
Sbjct: 193 VLSVINFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGS 252

Query: 261 YGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVIL 320
           YGFLRFSL LFP AS Y++P I++LS++ ++Y SLT +RQ DLK+++AY+S+AH+  V++
Sbjct: 253 YGFLRFSLGLFPLASVYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMI 312

Query: 321 GIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLL 380
           G+F+  V G+E ++L  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +P+F ++ 
Sbjct: 313 GLFTGTVIGVEAAILQSLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIF 372

Query: 381 FFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNL 440
            FFT+AN+GLPGTS+FIGEF++L+   + +  A  F+ + +IL   Y LW +NR+ +GN+
Sbjct: 373 LFFTMANLGLPGTSSFIGEFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNI 432

Query: 441 KENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           K        D+S +EFM  +PLV+ TL MG+YPN+F  ++H T+  L+
Sbjct: 433 KMVGL----DLSFREFMIFLPLVLGTLFMGIYPNLFFSAMHATVSNLV 476


gb|AEY83715.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Fossombronia cf. alaskana MGM031218-07SC]
(437 aa)

Score: 479 bits (1234), Expect: 1.15749e-132
Length: 433, Idn/Pos/Gap = 230/317/0 (53%/73%/0%)

Query:  46 LTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFL 105
           +T L ++  WI F+     FQFV + + L +  I +++G+DGIS   +ILT+ L  +C  
Sbjct:   4 ITLLYSLSFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISSSSVILTTSLTPICIP  63

Query: 106 LNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRK 165
           + + +   Y KE++I FF+ ES  +  F   DLL+FY+F E VLIP+F IIG++GSR RK
Sbjct:  64 VGFYSVRSYKKEYMIAFFICESFPIAVFRPPDLLIFYVFLESVLIPMFIIIGVWGSRQRK 123

Query: 166 IRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAV 225
           I+A+YQFFLYTL+GSL +L+AIL I F+TGTT+   L   +F ER+Q+LLW+AFFASF+V
Sbjct: 124 IKAAYQFFLYTLMGSLFMLLAILFISFQTGTTDPQILLTTEFSERRQILLWIAFFASFSV 183

Query: 226 KVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTL 285
           KVPM+P HI LPEAH EAPT+GS+I AGIL K G YGFLRFS+P+FP A+ Y++P IYTL
Sbjct: 184 KVPMVPVHIRLPEAHVEAPTAGSVIPAGILSKSGTYGFLRFSIPMFPEATPYFTPFIYTL 243

Query: 286 SIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSS 345
           S+IAIIY SLTT+RQ+DLKKI+AYSS+AH+ +V +G+FS N+QG+EGS+LL+L HG V S
Sbjct: 244 SVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSSNIQGIEGSILLMLSHGPVPS 303

Query: 346 ALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIG 405
           A FLCVG LYDR+KTRI+KYY GL + +P+ + +  F TLAN+ LPGTS+ IGEF IL+G
Sbjct: 304 APFLCVGALYDRHKTRIVKYYGGLVSTMPISSTIFSFPTLANMSLPGTSSSIGEFPILVG 363

Query: 406 LIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVIL 465
             Q + +    +  G+IL A++  W YNR +FGN K N+     D++++E +  +P +  
Sbjct: 364 AFQRNSLVATLAALGMILGAAHSPWLYNRAVFGNFKPNFILKFSDLNRREVLIFLPFIAG 423

Query: 466 TLIMGLYPNIFLH 478
            + MG+YP +FL 
Sbjct: 424 VIRMGVYPEVFLE 436


ref|YP_003288916.1| NADH dehydrogenase subunit 4 [Saccharina japonica]
ref|YP_003288954.1| NADH dehydrogenase subunit 4 [Saccharina religiosa]
ref|YP_003288992.1| NADH dehydrogenase subunit 4 [Saccharina ochotensis]
ref|YP_003289069.1| NADH dehydrogenase subunit 4 [Saccharina diabolica]
ref|YP_003289120.1| NADH dehydrogenase subunit 4 [Saccharina longipedalis]
ref|YP_004599016.1| NADH dehydrogenase subunit 4 [Saccharina japonica x latissima]
dbj|BAI48502.1| NADH dehydrogenase subunit 4 [Saccharina japonica]
dbj|BAI48540.1| NADH dehydrogenase subunit 4 [Saccharina religiosa]
dbj|BAI48578.1| NADH dehydrogenase subunit 4 [Saccharina ochotensis]
dbj|BAI48616.1| NADH dehydrogenase subunit 4 [Saccharina diabolica]
dbj|BAI48654.1| NADH dehydrogenase subunit 4 [Saccharina longipedalis]
gb|AEH43385.1| NADH dehydrogenase subunit 4 [Saccharina japonica x latissima]
(482 aa)

Score: 478 bits (1230), Expect: 3.20334e-132
Length: 462, Idn/Pos/Gap = 246/338/4 (53%/73%/0%)

Query:  27 FIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVD  86
           FIP +Q +++R F+L I+S  F+ +++LW+ FD S   FQFV+    L    I   LGVD
Sbjct:  19 FIPSSQKLIMRQFALGITSAVFVSSLFLWLGFDHSTPKFQFVVDSLWLPIANINLILGVD  78

Query:  87 GISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFE 146
           GISLFF+ILT+L+  +C L +W+ ++   K +LI F  +E +LL  F+ +DLL FYIFFE
Sbjct:  79 GISLFFVILTTLIFPLCLLASWSFDKGEVKTYLISFLSMELVLLLVFTNLDLLFFYIFFE 138

Query: 147 GVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVD 206
            VLIP+F +IGI+GSR RKIRA+Y FFLYTLLGSL +LI I+ IY   G+TN   L  ++
Sbjct: 139 AVLIPMFLVIGIYGSRERKIRAAYMFFLYTLLGSLFMLIGIVYIYLFAGSTNYEVLSVIN 198

Query: 207 FYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRF 266
           F    Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRF
Sbjct: 199 FSTYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRF 258

Query: 267 SLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFN 326
           SL LFP AS Y++P I++LS++ ++Y SLT +RQ DLK+++AY+S+AH+  V++G+F+  
Sbjct: 259 SLGLFPLASVYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGT 318

Query: 327 VQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLA 386
           V G+E ++L  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +P+F ++  FFT+A
Sbjct: 319 VIGVEAAILQSLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMA 378

Query: 387 NIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFK 446
           N+GLPGTS+FIGEF++L+   + +  A  F+ + +IL   Y LW +NR+ +GN+K     
Sbjct: 379 NLGLPGTSSFIGEFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNIKMVGL- 437

Query: 447 FLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
              D+S +EFM  +PLVI TL MG+YPN+F  ++H T+  L+
Sbjct: 438 ---DLSFREFMIFLPLVIGTLFMGIYPNLFFSAMHATVSNLV 476


dbj|BAD66789.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris]
(477 aa)

Score: 478 bits (1230), Expect: 3.36778e-132
Length: 473, Idn/Pos/Gap = 245/333/18 (51%/70%/3%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I ++FIP +++  IR   L  S +TFL +  L I FD S    QFV S + L +E
Sbjct:  19 PVLGSITLLFIPNSRIRSIRLIGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I ++LG+DGISLFF+ILT+ LI +C L+ W+    Y KE++    + E L++  F  +D
Sbjct:  79 NIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFLMIAVFCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+  E V IP+                   FFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 LLLFYVLSESVPIPML------------------FFLYTLLGSVFMLLAILLILLQTGTT 180

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L   +F ER+Q+ LW+AFFASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 181 DLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 240

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YGFLRFS+P+FP A+  ++P IYTLS IAIIY SLTTLRQ+DLKKI+AYSS+AH+ +
Sbjct: 241 LGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNF 300

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +L HG VSSALFLCVGVLYDR+KTR+++YY GL + +P F+
Sbjct: 301 VTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFS 360

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + FFFTLAN+ LPGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 361 TIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 420

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 421 GNLKPDFLHKFSDPNGREVFIFIPFLVGVVWMGVHPKVFPDRMHTSVSNLVQH 473


ref|YP_001419498.1| proton-translocating NADH-quinone oxidoreductase subunit M [Xanthobacter autotrophicus Py2]
gb|ABS69841.1| proton-translocating NADH-quinone oxidoreductase, chain M [Xanthobacter autotrophicus Py2]
(503 aa)

Score: 477 bits (1228), Expect: 5.32899e-132
Length: 476, Idn/Pos/Gap = 235/342/9 (49%/71%/1%)

Query:  18 PLLGCIIIIFIPRNQLVLIR---FFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G + I+ +  +  V  R   + +L  + +TF++++ L   FD +   FQFV  K  L
Sbjct:  14 PLVGALFILVVRGDDEVTARNARWVALWTTLVTFVVSLLLLPGFDSAASGFQFVEKKAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
             EL  Y +GVDGISL F+ILT+ L+  C L +W +  +  KE++I F ++E+L++  F 
Sbjct:  74 G-ELAAYHMGVDGISLPFVILTTFLMPFCILASWESVHKRVKEYMIAFLVLETLMIGTFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFY FFEG LIP+F IIGI+G + R+I A+++FFLYTL GS+L+++AI+ +Y+++
Sbjct: 133 ALDLVLFYFFFEGGLIPMFLIIGIWGGQ-RRIYAAFKFFLYTLAGSVLMMLAIMAMYWQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT++  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 192 GTTDVPTLLTHGFPSGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLR+SLP+FP AS Y++PL++TLS++AIIY SL  L Q D+KK++AYSSIAH
Sbjct: 252 LLKMGGYGFLRYSLPMFPEASHYFAPLVFTLSVVAIIYTSLVALVQEDIKKLIAYSSIAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QGL+G++ L++ HGFVS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNEQGLQGAMFLMISHGFVSGALFLCVGVIYDRLHTREIAAYGGLVHRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
           L+A +L  FT+AN+GLPGTS FIGEF+ ++   + +     F+ +G+ILSA Y LW Y R
Sbjct: 372 LYATVLMIFTMANVGLPGTSGFIGEFLTMLAAFERNTWIAFFAATGVILSAGYALWLYLR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP----NIFLHSIHITILR 486
           +IFG L++   K + D+S +E + ++PLVILT++ G++P    N+  H+++  + R
Sbjct: 432 VIFGPLEKEKLKTMMDLSPREIVIMVPLVILTILFGVWPAPILNMTSHAVNAVVAR 487


ref|YP_007305306.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium australicum WSM2073]
gb|AGB45930.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium australicum WSM2073]
(501 aa)

Score: 477 bits (1227), Expect: 5.84124e-132
Length: 477, Idn/Pos/Gap = 231/339/5 (48%/71%/1%)

Query:  18 PLLGCIIIIFI---PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI     N    IR  + I ++ TFL+++++W  FD S   FQFV     L
Sbjct:  14 PLVGVLLILFINDDSENARRNIRAIAFITTAFTFLVSLFIWAGFDNSQAGFQFVEKVAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+ +C L +W A E+  K ++I F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPLCILASWEAIEKRVKAYMIAFLLLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTL GS+L+L+AI+ ++F++
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLAGSVLMLLAIMAMFFQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPTLLTHSFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS  ++PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N +G++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ ++G+ + +     F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYATVFLIFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L ++  K L D+S +E   + PLV+L +  G+YP     +   ++  L+T++
Sbjct: 432 VIFGALTKDSLKGLLDLSTREKAIIYPLVVLVIFFGVYPAPVFDATAQSVKSLVTNV 488


ref|YP_003288878.1| NADH dehydrogenase subunit 4 [Saccharina coriacea]
dbj|BAI48730.1| NADH dehydrogenase subunit 4 [Saccharina coriacea]
(482 aa)

Score: 476 bits (1225), Expect: 9.88085e-132
Length: 462, Idn/Pos/Gap = 245/338/4 (53%/73%/0%)

Query:  27 FIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVD  86
           FIP +Q +++R F+L I+S  F+ +++LW+ FD S   FQFV+    L    I   LGVD
Sbjct:  19 FIPSSQKLIMRQFALGITSAVFVSSLFLWLGFDHSTPKFQFVVDSLWLPIANINLILGVD  78

Query:  87 GISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFE 146
           GISLFF+ILT+L+  +C L +W+ ++   K +LI F  +E +LL  F+ +DLL FYIFFE
Sbjct:  79 GISLFFVILTTLIFPLCLLASWSFDKGEVKTYLISFLGMELVLLLVFTNLDLLFFYIFFE 138

Query: 147 GVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVD 206
            VLIP+F +IGI+GSR RKIRA+Y FFLYTLLGSL +LI I+ IY   G+TN   L  ++
Sbjct: 139 AVLIPMFLVIGIYGSRERKIRAAYMFFLYTLLGSLFMLIGIVYIYLFAGSTNYEILSVIN 198

Query: 207 FYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRF 266
           F    Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRF
Sbjct: 199 FSPYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRF 258

Query: 267 SLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFN 326
           SL LFP AS Y++P I++LS++ ++Y SLT +RQ DLK+++AY+S+AH+  V++G+F+  
Sbjct: 259 SLGLFPLASVYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGT 318

Query: 327 VQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLA 386
           V G+E ++L  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +P+F ++  FFT+A
Sbjct: 319 VIGVEAAILQSLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMA 378

Query: 387 NIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFK 446
           N+GLPGTS+FIGEF++L+   + +  A  F+ + +IL   Y LW +NR+ +GN+K     
Sbjct: 379 NLGLPGTSSFIGEFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNIKMVGL- 437

Query: 447 FLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
              D+S +EFM  +PLV+ TL MG+YPN+F  ++H T+  L+
Sbjct: 438 ---DLSFREFMIFLPLVLGTLFMGIYPNLFFSAMHATVSNLV 476


ref|ZP_09293440.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium alhagi CCNWXJ12-2]
gb|EHK56613.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium alhagi CCNWXJ12-2]
(514 aa)

Score: 476 bits (1225), Expect: 1.15783e-131
Length: 481, Idn/Pos/Gap = 234/340/13 (48%/70%/2%)

Query:  18 PLLGCIIIIFIP-------RNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVIS  70
           PL+G  +I+ I        RN    IR  +L+ +  TF++++++W  FD +   FQ V  
Sbjct:  14 PLVGAFLILLIRDEGDSARRN----IRNVALLTTVFTFMLSLFIWAGFDYADTGFQMVEK  69

Query:  71 KKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLL 130
              L+   I Y +GVDGIS+ F+ILT+ L+ +C L +WN+ E   KE++I F ++E+L++
Sbjct:  70 ADWLD-SGISYHMGVDGISMLFVILTTFLMPLCILASWNSIEHRVKEYMIAFLILETLMI 128

Query: 131 NAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLI 190
             F+ +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+AI+ +
Sbjct: 129 GVFTALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAIMAM 187

Query: 191 YFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSII 250
           +F+ GTT+I  L   DF    QL LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+I
Sbjct: 188 FFQAGTTDIPTLLGHDFPAGMQLWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVI 247

Query: 251 LAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYS 310
           LAGILLK+GGYGFLRFSLP+FP AS Y+ PL++ LSI+AIIY SL  L Q D+KK++AYS
Sbjct: 248 LAGILLKMGGYGFLRFSLPMFPDASLYFQPLVFALSIVAIIYTSLVALMQEDMKKLIAYS 307

Query: 311 SIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLT 370
           S+AH+G+V +GIF+ N +G++GS+  +L HG VS ALFLCVGV+YDR  TR +  Y GL 
Sbjct: 308 SVAHMGFVTMGIFAMNQEGIQGSIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLV 367

Query: 371 TFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLW 430
             +P +AV+   FT+AN+GLPGTS F+GEF+ L+G+ + +    +F+ +G+ILSA+Y LW
Sbjct: 368 NNMPKYAVVFMIFTMANVGLPGTSGFVGEFLTLLGVFRVNTWVALFAATGVILSAAYALW 427

Query: 431 FYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
            Y ++IFG L +   K L D+S +E   + PLV+L +  G+YP     +   ++  L+ +
Sbjct: 428 LYRKVIFGVLSKESLKGLLDLSTREKAVIYPLVVLVIFFGVYPAPIFDATAASVQALVNN 487

Query: 491 I 491
           +
Sbjct: 488 V 488


ref|ZP_11177095.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium albertimagni AOL15]
gb|EKF58507.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium albertimagni AOL15]
(503 aa)

Score: 476 bits (1224), Expect: 1.4996e-131
Length: 477, Idn/Pos/Gap = 235/341/7 (49%/71%/1%)

Query:  18 PLLGCIIIIFIPRNQLVLIRF----FSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL+G + ++ + R    L R      SL+ +  TF++++++WI FD S   FQ V     
Sbjct:  14 PLVG-VALLLLTRGDTSLGRRNILNVSLLTTVFTFVVSLFIWINFDNSNTGFQMVEKHGW  72

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L    I Y +GVDGIS+ F+ILT+LL+  C L +W + E+  KE++I F ++E+L++  F
Sbjct:  73 LGTG-ISYHVGVDGISMLFVILTTLLMPFCILASWTSVEKRLKEYMIAFLILETLMIGVF 131

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
            ++D++LFY+FFE  LIP+F IIG++G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++
Sbjct: 132 VSLDIVLFYVFFEAGLIPMFIIIGVWGGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWD 190

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  L   DF  + Q  LWLAFFASFAVK+PM P H WLP+AH +APT+GS+ILAG
Sbjct: 191 AGTTDIAALLQHDFPPQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLKLGGYGFLRFSLP+FP AS +++P ++TLS+IAIIY SL  L Q D+KK++AYSS+A
Sbjct: 251 ILLKLGGYGFLRFSLPMFPLASDFFAPFVFTLSVIAIIYTSLVALMQDDMKKLIAYSSVA 310

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+GYV +GIF+ N QG++G++  ++ HGFVS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 311 HMGYVTMGIFAANQQGVQGAIFQMISHGFVSGALFLCVGVIYDRLHTREIAAYGGLVNNM 370

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +A+    FT+AN+GLPGTS F+GEF+ LIG+ + +    +F+ +G+ILSA+Y LW Y 
Sbjct: 371 PKYALAFMVFTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYR 430

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           R++FG L++   K + D+S +E + L PL+ LT+  G+YP   L +   ++  L+ +
Sbjct: 431 RVVFGALEKESLKSMLDLSTREKLTLYPLIALTIFFGVYPAPILDATAASVDNLVNN 487


ref|ZP_07373356.1| NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130]
gb|EFL90001.1| NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130]
(506 aa)

Score: 476 bits (1224), Expect: 1.52484e-131
Length: 460, Idn/Pos/Gap = 231/329/4 (50%/71%/0%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G +I+  I  +  V    +R  +L+ + LTFL+++ +W  FD S   FQFV   + +
Sbjct:  14 PLVGALIVFLIWEDSEVARRNVRMVALLTTCLTFLVSLGIWAGFDNSRADFQFVEKVEWI  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+  C L +W+A +   +E++I F ++E+L++  F 
Sbjct:  74 SEGGIAYHMGVDGISMLFVILTTFLMPFCILASWDAIQHRVREYMIAFLLLETLMIGVFC 133

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
           ++D++LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+L+AI+ +Y++ 
Sbjct: 134 SLDIVLFYVFFEAGLIPMFIIIGVWGGQ-RRVYASMKFFLYTLLGSVLMLLAIMAMYWQA 192

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L   DF    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 193 GTTDIPTLLAYDFPADMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 252

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS      ++ LS+IAIIY SL  L Q D+KK++AYSS+AH
Sbjct: 253 LLKMGGYGFLRFSLPMFPLASDTMQNFVFALSVIAIIYTSLVALMQEDIKKLIAYSSVAH 312

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ NVQG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 313 MGYVTMGIFTANVQGIQGAIFQMLAHGLVSGALFLCVGVVYDRMHTREIAAYGGLVNNMP 372

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGT+ F+GEF+ L+G  Q +    IF+T G+ILSA+Y LW Y R
Sbjct: 373 KYAVAFLIFTMANVGLPGTAGFVGEFLTLLGAFQANTWVAIFATLGVILSAAYALWLYRR 432

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPN 474
           ++FG L +   K + D++ +E + L PLV+L +  G+YP+
Sbjct: 433 VVFGTLDKEALKAMLDLNTREKVILYPLVVLVIFFGVYPS 472


ref|YP_004303808.1| proton-translocating NADH-quinone oxidoreductase, subunit M subfamily protein [Polymorphum gilvum SL003B-26A1]
gb|ADZ70506.1| Proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Polymorphum gilvum SL003B-26A1]
(506 aa)

Score: 475 bits (1223), Expect: 1.77194e-131
Length: 476, Idn/Pos/Gap = 230/336/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL G + I+ +P +       IR  +L+ +  TF++++++W  FD     FQ V S+  L
Sbjct:  14 PLAGVLAILLVPGDDEGAKRNIRMVALVTTLFTFVLSLFIWGAFDYDNPGFQMVESRDWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+  C L +W + ++  KE++I F ++E+L++  F 
Sbjct:  74 S-GTITYKMGVDGISMLFVILTTFLMPFCILASWESVQKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL++FY+FFE  L+P+F IIG++G + R++ ASY+FFLYTLLGS+L+LIA++ +Y+E 
Sbjct: 133 ALDLVVFYVFFEAGLLPMFLIIGVWGGK-RRVYASYKFFLYTLLGSVLMLIAVMAMYWEA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F E  Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDITVLLRHPFGESMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS  ++PL++TLS++AI+Y SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPLASDMFAPLVFTLSVVAIVYTSLVALAQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+   QG++G L  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGYVTMGIFTMTPQGVQGGLFQMLSHGIVSGALFLCVGVIYDRMHTREISAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS F+GEF+ L+G  + +    + +T+G+ILSA+Y L+ Y R
Sbjct: 372 FYAVAFLIFTMANVGLPGTSGFVGEFLTLMGAFEVNTWVALIATTGVILSAAYALFLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           ++FG L +   K + D+S +E   L+P+++LT++ G YP   L     ++  L+T+
Sbjct: 432 VVFGALDKESLKSITDLSFREQAILVPMIVLTVLFGFYPAPILDVTQASVDALITN 487


ref|ZP_10234882.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor aquibiodomus RA22]
gb|EIM75873.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor aquibiodomus RA22]
(504 aa)

Score: 474 bits (1220), Expect: 4.29097e-131
Length: 477, Idn/Pos/Gap = 231/341/5 (48%/71%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +  TF++++++WI FD S   FQ V  ++ L
Sbjct:  14 PLVGALLILLIREDGAGARRNIRNVALLTTVFTFVLSLFIWIGFDASTPGFQMVEKQEWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+ +C L +W A E   KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISMLFVILTTFLMPLCVLASWEAVEHRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+A++ +Y++ 
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAMMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F E  Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPTLLTHVFPEGMQYWLWVAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS   +PL++TLS+IAIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPVASIDLAPLVFTLSVIAIIYTSLVALMQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAINEQGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ L+ + + +    +F+T+G+ILSA Y LW Y R
Sbjct: 372 KYATVFMIFTMANVGLPGTSGFVGEFLTLLSVFKVNTWVALFATTGVILSAGYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K + D+S +E + L PLV+L +  G+YP   L +  +++  L+ ++
Sbjct: 432 VVFGSLTKESLKGMLDLSAREKLILYPLVVLVIFFGVYPAPILDATAVSVEALVNNV 488


ref|YP_004612230.1| proton-translocating NADH-quinone oxidoreductase subunit M [Mesorhizobium opportunistum WSM2075]
gb|AEH88136.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium opportunistum WSM2075]
(501 aa)

Score: 474 bits (1219), Expect: 5.89189e-131
Length: 477, Idn/Pos/Gap = 227/340/5 (47%/71%/1%)

Query:  18 PLLGCIIIIFI---PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI     N    IR  +L+ ++ TF+I++++W  FD S   FQFV     L
Sbjct:  14 PLVGVLLILFINDDSENARRNIRAIALLTTTFTFIISLFIWTGFDNSQAGFQFVEKAAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+ +C L +W + E+  K +++ F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMVAFLLLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTL GS+L+L+AI+ +++++
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLAGSVLMLLAIMAMFYQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILA I
Sbjct: 192 GTTDIPTLLTHSFPANMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS  ++PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N +G++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIDAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ ++G+ + +     F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L ++  K L D+S +E   + PLV+L +  G+YP     +   ++  L+T++
Sbjct: 432 VIFGALTKDSLKGLLDLSPREKAIIYPLVVLVIFFGVYPAPVFDATAQSVKSLVTNV 488


ref|YP_002608409.1| NADH dehydrogenase subunit 4 [Vitis vinifera]
emb|CAQ77679.1| NADH dehydrogenase subunit 4 [Vitis vinifera]
gb|ACS15181.1| NADH dehydrogenase subunit 4 [Vitis vinifera]
(495 aa)

Score: 473 bits (1218), Expect: 7.69504e-131
Length: 473, Idn/Pos/Gap = 239/322/0 (50%/68%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTATSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  +LG+DGISLFF+ILT+ LI +C  + W+    Y KE++    + E L++  F  +D
Sbjct:  79 NINLYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+F IIG++GSR RKI+A+YQFFLYTLLGS+ +L+AILLI  +TGTT
Sbjct: 139 PLLFYVLPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +       +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 199 DSQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+FP A+   +P IYT S IAIIY S TT RQ+DLKKI+AYS +AH+  
Sbjct: 259 LGTHGFLRFSIPMFPEATLRSTPFIYTPSAIAIIYTSSTTSRQIDLKKIIAYSPVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+FS N+QG+ GS+L +  HG V SALFLCVGVLYDR+KTR+ +YY G  + +P   
Sbjct: 319 VTIGMFSPNIQGIGGSILPMSSHGPVPSALFLCVGVLYDRHKTRLARYYGGSVSTMPNLP 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF I +G  Q + +    +  G+IL A+Y LW YNR + 
Sbjct: 379 TISFSSTLANMSSPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    IP ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNLKPDFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQH 491


ref|ZP_11122436.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira profundimaris WP0211]
gb|EKF07648.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira profundimaris WP0211]
(505 aa)

Score: 473 bits (1218), Expect: 8.29514e-131
Length: 477, Idn/Pos/Gap = 232/334/4 (48%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIR---FFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G  +++ I   +  + R   + +L  S  TFL+++ LW+ FD +   FQFV     +
Sbjct:  14 PLVGAALLLLINGEEATVARNSRWVALWTSGFTFLVSLMLWVNFDATTADFQFVEQADWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L + L  +C L  W A ++  KE++I F ++E++++  FS
Sbjct:  74 PGLNISYHMGVDGISVLFVLLATFLTPICILSAWEAIQKRVKEYMIAFLVLETMMVGMFS 133

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D LLFY+FFEGVLIP+F IIG++G + R++ A+++ FLYTLLGS+L+L+A+L +YFE 
Sbjct: 134 ALDGLLFYLFFEGVLIPMFIIIGVWGGQ-RRVYAAFKLFLYTLLGSVLMLVALLAMYFEA 192

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    QL LWLAFFASFAVKVPM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 193 GTTDIPTLMEYGFDYNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGV 252

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+ P AS  ++PL++TLSI+AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 253 LLKMGGYGFLRFSLPMMPLASETFAPLVFTLSIVAIIYTSLVALAQQDMKKLIAYSSVAH 312

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G V +G F+FN  G+EGS+  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 313 MGIVTIGAFTFNQHGIEGSIFQMLSHGVVSGALFLCVGVVYDRIHTREIDAYGGLVHRMP 372

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A++  FFT+A++GLPGT  F+GE + L+G  + +     F+ +G+IL A+Y L+ Y R
Sbjct: 373 SYALIFMFFTMASVGLPGTGGFVGEILALLGAFEANTWVAFFAATGLILGAAYALYLYRR 432

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L +   K + D+S +E++   PLVI+ L MG+YP  FL  +H+++  L+  +
Sbjct: 433 IIFGALTKENLKTILDLSPREWIIFAPLVIIVLWMGVYPVSFLDIMHVSVENLVNQV 489


ref|NP_150412.1| NADH dehydrogenase subunit 4 [Pylaiella littoralis]
emb|CAC50853.1| NADH dehydrogenase subunit 4 [Pylaiella littoralis]
(482 aa)

Score: 473 bits (1217), Expect: 9.55929e-131
Length: 468, Idn/Pos/Gap = 238/334/4 (50%/71%/0%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQ  80
           G + +IFIP  Q +++R ++L ++SL F+ +++LW+ FD S   FQ+V+    + F  I 
Sbjct:  13 GVVGLIFIPSYQKLIMRQYALGVTSLVFVCSLFLWLGFDHSTSKFQYVVDWLWVPFANIN  72

Query:  81 YFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLL 140
             LGVDGISLFF+ILT+L+  +C L +W+ ++   K +LI F  +E +LL  F+ +DLL 
Sbjct:  73 LVLGVDGISLFFVILTTLIFPLCLLASWSFDKGDVKTYLISFLSMELVLLLVFTNLDLLF 132

Query: 141 FYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNIN 200
           FY+FFE VLIP+F +IGI+GSR RKIRA+Y FFLYTL GSL +LI ++ IY   G+TN  
Sbjct: 133 FYVFFEAVLIPMFLVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYE 192

Query: 201 FLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGG 260
            L  V F    Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG 
Sbjct: 193 ALSTVSFSSYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGS 252

Query: 261 YGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVIL 320
           YGFLRFSL LFP AS Y++P +++LS++ ++Y  LT +RQ DLK++ AY+S+AH+  V++
Sbjct: 253 YGFLRFSLGLFPEASLYFTPFVFSLSLLGVVYTLLTAIRQTDLKRLTAYTSVAHMNLVMI 312

Query: 321 GIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLL 380
           G+F+  V G+E S+L  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +PLF ++ 
Sbjct: 313 GLFTGTVIGVEASILQSLSHGFVSSALFLIIGVLYDRFHSRVIKYYGGLTHTMPLFIIIF 372

Query: 381 FFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNL 440
            FFT+AN+GLPGTS+F+GEF++L    + +    +F+ + +IL   Y LW +NR+ +GN+
Sbjct: 373 LFFTMANLGLPGTSSFVGEFLLLASAFEANTTLCLFAATSMILGGGYSLWLFNRIAYGNI 432

Query: 441 KENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           K        D+S +EF+  +PLV  TL MG+YP +F   +H  +  L+
Sbjct: 433 KIVGL----DLSFREFIIFLPLVSGTLFMGIYPKVFFSVMHAAVSNLV 476


ref|ZP_11116369.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira xiamenensis M-5 = DSM 17429]
gb|EKF13391.1| NADH:ubiquinone oxidoreductase subunit M [Thalassospira xiamenensis M-5 = DSM 17429]
(505 aa)

Score: 473 bits (1216), Expect: 1.09246e-130
Length: 477, Idn/Pos/Gap = 232/333/4 (48%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIR---FFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G + ++ I   +  + R   + +L  S  TFL ++ LW+ FD +   FQFV     +
Sbjct:  14 PLIGALFVLLIRGEEANVARNSRWVALWTSGFTFLASLMLWVNFDSTTADFQFVEKADWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L + L  +C L  W A ++  KE++I F ++E++++  FS
Sbjct:  74 PGLNISYHMGVDGISMLFVLLATFLTPICILSAWEAIQKRVKEYMIAFLILETMMVGMFS 133

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D LLFY+FFEGVLIP+F IIG++G + R++ A+++ FLYTLLGS+L+L+A+L +YFE 
Sbjct: 134 ALDGLLFYLFFEGVLIPMFIIIGVWGGQ-RRVYAAFKLFLYTLLGSVLMLVALLAMYFEA 192

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    QL LWLAFFASFAVKVPM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 193 GTTDIPTLMAHGFSYNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGV 252

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+ P AS  ++PL++TLSI+AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 253 LLKMGGYGFLRFSLPMMPLASETFAPLVFTLSIVAIIYTSLVALAQQDMKKLIAYSSVAH 312

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G V +G F+FN  G+EGS+  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 313 MGIVTIGAFTFNQHGIEGSIFQMLSHGVVSGALFLCVGVVYDRMHTREIDAYGGLVHRMP 372

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+  FFT+A++GLPGT  F+GE + L+G  + +     F+ +G+IL A+Y L+ Y R
Sbjct: 373 GYAVIFMFFTMASVGLPGTGGFVGEILALLGAFEANTWVAFFAATGLILGAAYALYLYRR 432

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG L +   K + D+S +E++   PLVI+ L MG+YP  FL  +H+++  L+  +
Sbjct: 433 IVFGALTKENLKSILDMSPREWLIFAPLVIIVLWMGVYPVSFLDIMHVSVEHLVNQV 489


emb|CBJ18022.1| NADH dehydrogenase subunit 4 [Ectocarpus siliculosus]
(482 aa)

Score: 473 bits (1216), Expect: 1.09246e-130
Length: 469, Idn/Pos/Gap = 242/341/4 (51%/72%/0%)

Query:  20 LGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELI  79
           LG   +I IP ++ +L+R ++L I+S+ F+ ++ LW+ FD+S   FQ+V++   L    I
Sbjct:  12 LGIAGLIAIPSDKKLLMRQYALFITSVVFVFSLLLWLGFDQSTPKFQYVVNWLWLPVANI  71

Query:  80 QYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLL 139
              LG+DGISLFF+ILT+L+  +C L +W+ ++   K +LI F  +E +LL  F+ +DLL
Sbjct:  72 NLVLGIDGISLFFVILTTLIFPLCLLASWSFDKGDIKTYLISFLSMELVLLLVFTNLDLL 131

Query: 140 LFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNI 199
            FYIFFE VLIP+F +IGI+GSR RKIRA+Y FFLYTL GSL +LI ++ IY   G+TN 
Sbjct: 132 FFYIFFEAVLIPMFLVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNY 191

Query: 200 NFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLG 259
             L  V F    Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG
Sbjct: 192 ESLATVSFSNYDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLG 251

Query: 260 GYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVI 319
            YGFLRFSL LFP AS Y++P +++LS++ ++Y SLT +RQ DLK+++AY+S+AH+  V+
Sbjct: 252 SYGFLRFSLGLFPEASVYFTPFVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVM 311

Query: 320 LGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVL 379
           +G+F+  V G+E ++L  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +P+F ++
Sbjct: 312 IGLFTGTVIGVEAAILQSLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIII 371

Query: 380 LFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGN 439
             FFT+AN+GLPGTS+FIGEF++L+   + +  A  F+ + +IL   Y LW +NR+ +GN
Sbjct: 372 FLFFTMANLGLPGTSSFIGEFLLLVSAFEANTTACFFAATSMILGGGYSLWLFNRIAYGN 431

Query: 440 LKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           +K   F    D+S +EF+  +PLVI TL MG+YPN+F  ++H  +  L+
Sbjct: 432 VKLVGF----DLSLREFILFLPLVIGTLFMGIYPNVFFSAMHAAVSNLV 476


ref|NP_102960.1| NADH dehydrogenase subunit M [Mesorhizobium loti MAFF303099]
dbj|BAB48746.1| NADH-ubiquinone dehydrogenase chain 13 [Mesorhizobium loti MAFF303099]
(501 aa)

Score: 473 bits (1216), Expect: 1.12953e-130
Length: 477, Idn/Pos/Gap = 229/339/5 (48%/71%/1%)

Query:  18 PLLGCIIIIFI---PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI     N    IR  +L+ ++ TF+I++++W  FD S   FQFV     L
Sbjct:  14 PLVGVLLILFIRDDSENARRNIRAIALLTTTFTFIISVFIWTGFDNSQSGFQFVEKAAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+ +C L +W A E+  K ++I F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPLCILASWEAIEKRVKAYMIAFLLLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTL GS+L+L+AI+ +++++
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLAGSVLMLLAIMAMFYQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILA I
Sbjct: 192 GTTDIPTLLTHSFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS  ++PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQDDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N +G++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ ++G+ + +     F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L ++  K L D+S +E + + PLV L +  G+YP     +   ++  L+T++
Sbjct: 432 VIFGALTKDSLKGLLDLSLREKVIIYPLVALVIFFGVYPAPVFDATAQSVKSLVTNV 488


ref|ZP_09088824.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium amorphae CCNWGS0123]
gb|EHH10556.1| NADH:ubiquinone oxidoreductase subunit M [Mesorhizobium amorphae CCNWGS0123]
(501 aa)

Score: 473 bits (1216), Expect: 1.36849e-130
Length: 477, Idn/Pos/Gap = 229/339/5 (48%/71%/1%)

Query:  18 PLLGCIIIIFI---PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI     N    IR  +L  +S+TF++++++W  FD S   FQFV     L
Sbjct:  14 PLVGVLLILFINDDSENARRNIRAIALWTTSITFIVSLFIWTGFDNSQAGFQFVEKFAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y LGVDGIS+ F+ILT+ L+ +C L +W + E+  K ++I F ++E+L++  F 
Sbjct:  74 D-SGISYHLGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMIAFLLLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTL GS+L+L+AI+ ++F++
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLAGSVLMLLAIMAMFFQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILA I
Sbjct: 192 GTTDIPTLLTHNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS  ++PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N +G++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTRDIDAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ ++G+ + +     F+ +G++LSA+Y LW Y R
Sbjct: 372 KYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVVLSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L +   K L D+S +E   + PLV+L +  G+YP     +   ++  L+T++
Sbjct: 432 VIFGALTKESLKGLLDLSPREKAIIYPLVVLVIFFGVYPAPVFDATAESVKALVTNV 488


ref|YP_005090325.1| nad4 gene product (mitochondrion) [Phaeodactylum tricornutum]
gb|ADY18501.1| NADH dehydrogenase subunit 4 [Phaeodactylum tricornutum]
(493 aa)

Score: 472 bits (1215), Expect: 1.60358e-130
Length: 477, Idn/Pos/Gap = 243/345/0 (50%/72%/0%)

Query:   8 DSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQF  67
            +LLI+I  FP++G + +  IP ++   +R  +L ++ L+F   + L+  F +    FQ+
Sbjct:   8 KNLLIYIFLFPIIGSLFLSLIPASEEKFMRVVALNVTGLSFTGCLLLFGFFHKGTGAFQY  67

Query:  68 VISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIES 127
           V+         +   LGVDGIS+FF++LT+LLI +C L +WN+ +   KEFLI F ++E 
Sbjct:  68 VLQYPWFLGLNLNLTLGVDGISIFFLLLTTLLIPLCILASWNSVKSSLKEFLITFLVLEF 127

Query: 128 LLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAI 187
            L+  F T+DL+ FYIFFE VLIP+F IIGI+GSR RK+ ASY FFLYTL GS+L+L+++
Sbjct: 128 FLIGVFCTLDLVFFYIFFESVLIPMFLIIGIWGSRERKVLASYYFFLYTLFGSVLMLLSV 187

Query: 188 LLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG 247
           L IY++ GTT+   L    F E++Q  LW  FF +FA K+PMIP H+WLPEAH EAPT+G
Sbjct: 188 LYIYWQVGTTDYQLLLAFSFSEQEQKFLWFTFFLAFASKIPMIPVHLWLPEAHVEAPTAG 247

Query: 248 SIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIV 307
           S+ILAG+LLKLG YGF+RFSLPLFP ASF+++PL+Y +S   ++Y S T +RQ D K+I+
Sbjct: 248 SVILAGVLLKLGTYGFIRFSLPLFPQASFFFTPLVYAISASGVVYTSFTAIRQTDFKRII 307

Query: 308 AYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYS 367
           AY+SIAH+  VILG+FSFN  G+EG++   L HGFV+SALFL +GV+YDRY+TRI++YY 
Sbjct: 308 AYTSIAHMNLVILGVFSFNTIGIEGAIFQSLSHGFVASALFLIIGVVYDRYRTRIVRYYG 367

Query: 368 GLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASY 427
           GLT+ +P++A +  FFT+ANI  PGTS+F+GEF+IL G  + + I TI S   II+  +Y
Sbjct: 368 GLTSVMPIYATIFLFFTMANISFPGTSSFVGEFLILTGSFKVNTIITILSAMSIIIGGAY 427

Query: 428 CLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
            LW +NR+++GNLK  +     DIS +EF+  +PL+  T IMG+YP+IFL+ IH+++
Sbjct: 428 SLWLFNRIVYGNLKTQHTNTFLDISAREFLIFLPLISGTFIMGIYPDIFLNPIHMSV 484


gb|AEA11190.1| NADH dehydrogenase subunit 4 (mitochondrion) [Selaginella moellendorffii]
gb|AEA29877.1| NADH dehydrogenase subunit 4 (mitochondrion) [Selaginella moellendorffii]
(505 aa)

Score: 471 bits (1213), Expect: 2.51634e-130
Length: 468, Idn/Pos/Gap = 233/330/2 (49%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+ G I+   IP +++  +    L  S  TFL ++  WI F  S   FQ V + + L   
Sbjct:  19 PIAGVILAGLIPEDRVRFVYRIGLCTSLFTFLCSLLFWIRFHASTADFQAVEAIRWLPDS  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
                +G+DG+SLFF++LT+ LI  CFL+ W++  +  KE+ I+  + ES+L+  F  +D
Sbjct:  79 DAYIVIGIDGLSLFFVVLTTFLIPTCFLVGWSSIPQ-RKEYTIVLLVSESILIAVFCMLD 137

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           LLLFY+FFE VLIP+F +IGI+GSR RKI+A+YQFFLYTLLGS+ +L+AIL+I+  TGTT
Sbjct: 138 LLLFYVFFESVLIPLFLLIGIWGSRERKIKAAYQFFLYTLLGSVFMLLAILIIFSHTGTT 197

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           ++  L  +++ ER+QLLLW++FFASF+ KVPM+P HIWLPEAH EAPT+GS+ILAGILLK
Sbjct: 198 DVPILLTIEYGERRQLLLWMSFFASFSGKVPMVPVHIWLPEAHVEAPTAGSVILAGILLK 257

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG YG LRF++ + P A+ Y++PLIY L++IAI+Y SLTTLRQ+DLK+ +AYSS+AH+  
Sbjct: 258 LGTYGLLRFNISMCPVATLYFTPLIYGLTLIAIVYTSLTTLRQIDLKRNIAYSSVAHMNL 317

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
             LG+FS N++G+EGSL L+L HG VSSALFLCV  LYDR KTR+L YY GL   +P+ +
Sbjct: 318 ATLGMFSLNIEGIEGSLYLMLSHGLVSSALFLCVAGLYDRCKTRLLTYYGGLVRTMPILS 377

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGL-IQTSVIATIFSTSGIILSASYCLWFYNRLI 436
               FFTLAN+ LPGTS+FIGEF++ +G+  +   IA +     +I+ A+Y LW Y R+ 
Sbjct: 378 AFFLFFTLANMSLPGTSSFIGEFLVFVGVFARNHSIAGMGGVGIMIIGAAYSLWLYTRVA 437

Query: 437 FGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
            G LK        D+ ++E    +P +   + MG+YP+++L  +H ++
Sbjct: 438 CGQLKPQTLGRCTDVQRREAFIYLPFIAGVIWMGVYPDVYLECLHASL 485


ref|ZP_10587720.1| proton-translocating NADH-quinone oxidoreductase, chain M [Phyllobacterium sp. YR531]
gb|EJN03547.1| proton-translocating NADH-quinone oxidoreductase, chain M [Phyllobacterium sp. YR531]
(501 aa)

Score: 471 bits (1213), Expect: 2.75822e-130
Length: 459, Idn/Pos/Gap = 232/330/5 (50%/71%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G  +I+ I  +       IR  +L  + +TFL+++ +W  FD +   FQFV     L
Sbjct:  14 PLVGAFLILLIRDDSDAARRNIRNVALWTTIITFLLSLPIWYYFDNAQAGFQFVEKAAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+ +C L +W A +   KE++I F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPLCILASWEAIQTRVKEYMIAFLVLETLMVGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE VL+P+F IIG++G + R++ AS++FFLYTLLGS+L+L+AI+ +Y++ 
Sbjct: 133 ALDIVLFYVFFEAVLVPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q  LW AFFASFAVK+PM P H WLP+AH EAPT+ S ILAGI
Sbjct: 192 GTTDIPTLLAHSFPVSMQTWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAASAILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++P+IYTLS++AI+Y SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPVASADFAPIIYTLSVVAIVYTSLVALMQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N QG++G+L  +L HG VS+ALFLCVG++YDR  TR +  Y GL   +P
Sbjct: 312 MGYVTMGIFAANEQGIQGALFQMLSHGLVSAALFLCVGIVYDRTHTREISAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPGTS FIGEF+ L+G+ + +    +F+TSG+I SA+Y LW Y R
Sbjct: 372 KYAVVFLIFTMANVGLPGTSGFIGEFLTLMGVFRVNTWVALFATSGVIFSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           ++FG+L +   K L D+S +E   + PL+ILT+  G+YP
Sbjct: 432 VVFGSLDKESLKALLDMSPREKAVIYPLLILTIFYGVYP 470


ref|YP_004142470.1| proton-translocating NADH-quinone oxidoreductase subunit M [Mesorhizobium ciceri biovar biserrulae WSM1271]
gb|ADV12420.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium ciceri biovar biserrulae WSM1271]
(501 aa)

Score: 471 bits (1212), Expect: 3.25913e-130
Length: 477, Idn/Pos/Gap = 228/339/5 (47%/71%/1%)

Query:  18 PLLGCIIIIFI---PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI     N    IR  +L+ ++ TF+I++++W  FD S   FQFV     L
Sbjct:  14 PLVGVLLILFINDDSENARRNIRAIALLTTTFTFIISLFIWTGFDNSQSGFQFVEKVAWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+ +C L +W + E+  K ++I F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMIAFLLLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTL GS+L+L+AI+ ++F++
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLAGSVLMLLAIMAMFFQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPTLLTHNFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYG LRFSLP+FP AS  ++PL++ LS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGLLRFSLPMFPLASEMFAPLVFALSVVAIIYTSLVALMQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N +G++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ ++G+ + +     F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYATVFLIFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L +   K L D+S +E + + PLV+L +  G+YP     +   ++  L+T++
Sbjct: 432 VIFGALTKESLKGLLDLSPREKVIIYPLVVLVIFFGVYPAPVFDATAQSVKSLVTNV 488


ref|ZP_01547429.1| NADH dehydrogenase subunit M [Stappia aggregata IAM 12614]
gb|EAV44159.1| NADH dehydrogenase subunit M [Stappia aggregata IAM 12614]
(508 aa)

Score: 471 bits (1212), Expect: 3.4841e-130
Length: 476, Idn/Pos/Gap = 234/334/5 (49%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQ---LVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PLLG + I+ +P N       IR  +L+ +S+TFL+++++W  FD +   FQFV  ++ L
Sbjct:  14 PLLGVLFILLVPGNDEGSKKNIRMVALVTTSVTFLLSLFIWGNFDYANSGFQFVEHREWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+  C L +W++ ++  KE++I F ++E+L++  F 
Sbjct:  74 GSN-ISYRMGVDGISVLFVILTTFLMPFCILASWDSVQKRVKEYMIAFLVLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL++FY+FFE  LIP+F IIG++G   R++ ASY+FFLYTLLGS+L+LIAI+ +Y+  
Sbjct: 133 ALDLVVFYVFFEAGLIPMFLIIGVWGG-ARRVYASYKFFLYTLLGSVLMLIAIMAMYWNA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTTNI  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 192 GTTNIEELLVHQFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++P ++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASDMFAPFVFTLSVVAIIYTSLVALAQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+   QG++G +  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGYVTMGIFTMTEQGVQGGIFQMLSHGIVSGALFLCVGVIYDRMHTRDITAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS F+GE + L+G  Q +     F+T+G+ILSA+Y L+ Y R
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFVGEILTLMGAFQVNSWVAFFATTGVILSAAYALYLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           ++FG L++   K + D++ +E + L+P++ILT+  G YP   L      +  L+  
Sbjct: 432 VVFGALEKESLKSILDLNLREKVILVPMIILTIFFGFYPMAILDVTQGAVDNLINQ 487


ref|YP_006398632.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA 257]
gb|AFL51875.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium fredii USDA 257]
(503 aa)

Score: 471 bits (1212), Expect: 3.88327e-130
Length: 434, Idn/Pos/Gap = 231/320/2 (53%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ + + F +++Y+W  FD S   FQ V   + L    I Y LG+DGIS+ F+ LT+ L
Sbjct:  39 SLLTTIVVFGLSLYVWYQFDSSNPGFQMVEKHEWLGTG-ISYHLGIDGISVLFLPLTAFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W   E+  KE++I F ++E+L+L  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWVTIEKRLKEYMIAFLLLETLMLGVFVSLDIVLFYVFFEAGLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L   +F  + Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKYNFPRQMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYGFLRFSLP+FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL+YTLSIIAIIY SL  + Q D+KK++AYSS+AH+GYV +G F+ N+QG++G++  +L 
Sbjct: 277 PLVYTLSIIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
            + L+G  + +    +F+TSG+ILSA+Y LW Y R+IFG L+++  K L D+S +E + L
Sbjct: 397 VLTLVGAFRANTWVALFATSGVILSAAYALWLYRRVIFGALEKDSLKALLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLVILT+  G+YP
Sbjct: 457 YPLVILTIFFGVYP 470


ref|NP_385384.1| NADH dehydrogenase subunit M [Sinorhizobium meliloti 1021]
ref|YP_004548440.1| proton-translocating NADH-quinone oxidoreductase chain M [Sinorhizobium meliloti AK83]
ref|YP_005713078.1| proton-translocating NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti BL225C]
ref|YP_005720814.1| probabable nadh dehydrogenase i chain m transmembrane protein [Sinorhizobium meliloti SM11]
ref|YP_006839884.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti Rm41]
ref|ZP_12976167.1| NADH:ubiquinone oxidoreductase subunit M [Sinorhizobium meliloti CCNWSX0020]
ref|YP_007189850.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti GR4]
emb|CAC45857.1| Probable NADH dehydrogenase I chain M transmembrane protein [Sinorhizobium meliloti 1021]
gb|AEG03835.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti BL225C]
gb|AEG52826.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti AK83]
gb|AEH79553.1| probabable nadh dehydrogenase i chain m transmembrane protein [Sinorhizobium meliloti SM11]
gb|EHK75954.1| NADH:ubiquinone oxidoreductase subunit M [Sinorhizobium meliloti CCNWSX0020]
emb|CCM67058.1| NADH-quinone oxidoreductase subunit M [Sinorhizobium meliloti Rm41]
gb|AGA06251.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti GR4]
(503 aa)

Score: 469 bits (1208), Expect: 1.12986e-129
Length: 434, Idn/Pos/Gap = 230/318/2 (52%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TFL+++Y+W  FD S   FQ V  ++ L    I Y LGVDGIS+ F+ LT+ L
Sbjct:  39 SLLTTVFTFLVSLYIWYQFDPSNPGFQMVEKREWLGTG-ISYHLGVDGISILFVPLTAFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W   E+  KE++I F ++E+L+L  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWVTIEKRLKEYMIAFLILETLMLGVFVSLDIILFYVFFEAGLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+A++ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKER-VYASYKFFLYTLLGSVLMLLAMMAMYWQAGTTDITQLLAYQFPREMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYGFLRFSLP+FP AS +++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDFFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLSIIAIIY SL  + Q D+KK++AYSS+AH+GYV +G F+ NVQG++G++  +L 
Sbjct: 277 PFVFTLSIIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
            + L+G  + +    +F+T+G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 VLTLVGAFRANTWVALFATTGVILSAAYALWLYRRVIFGALEKESLKALLDLSAREKLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLVILT+  G+YP
Sbjct: 457 YPLVILTIFFGVYP 470


ref|YP_001326592.1| NADH dehydrogenase subunit M [Sinorhizobium medicae WSM419]
gb|ABR59757.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium medicae WSM419]
(503 aa)

Score: 469 bits (1208), Expect: 1.13933e-129
Length: 434, Idn/Pos/Gap = 229/319/2 (52%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TFL+++Y+W  FD S   FQ +  ++ L    I Y LGVDGIS+ F+ LT+ L
Sbjct:  39 SLLTTIFTFLVSLYVWYQFDPSNPGFQMIEKREWLGAG-ISYHLGVDGISILFVPLTAFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W   E+  KE++I F ++E+L+L  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWVTIEKRLKEYMIAFLILETLMLGVFVSLDIILFYVFFEAGLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+A++ +Y++ GTT+I  L    F  + Q  LWLAF
Sbjct: 158 GGKER-VYASYKFFLYTLLGSVLMLLAMMAMYWQAGTTDITQLLAYQFPRQMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYGFLRFSLP+FP AS +++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDFFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLS+IAIIY SL  + Q D+KK++AYSS+AH+GYV +G F+ NVQG++G++  +L 
Sbjct: 277 PFVFTLSVIAIIYTSLVAMMQTDIKKLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
            + L+G  + +    +F+TSG+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 VLTLVGAFRANTWVALFATSGVILSAAYALWLYRRVIFGALEKESLKALLDLSPREKLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLVILT+  G+YP
Sbjct: 457 YPLVILTIFFGVYP 470


ref|ZP_01440278.1| NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506]
gb|EAU40389.1| NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506]
(502 aa)

Score: 469 bits (1206), Expect: 1.9434e-129
Length: 459, Idn/Pos/Gap = 234/331/5 (50%/72%/1%)

Query:  18 PLLGCIIIIFI-PRNQLVL--IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G  +I+ I   N+L    IR  +L+ +  TF++++++W  FD     FQFV   + L
Sbjct:  14 PLVGAFLILLIQDDNELARRNIRNVALLTTVFTFVVSLWIWGEFDYQTTGFQFVEQAEWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+ +C L ++ + +   KE++I F ++E+L++  F 
Sbjct:  74 GTG-ITYHMGVDGISMLFVILTTFLMPLCILASFESVKTRVKEYMIAFLVLETLVIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFYIFFEG LIP+F IIG++G + R+I ASY+FFLYT LGS+L+L+A++ +Y+  
Sbjct: 133 ALDLILFYIFFEGGLIPMFLIIGVWGGK-RRIYASYKFFLYTFLGSVLMLVAMMAMYWNA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L   DF    Q  LW AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTSIPELLAHDFPASMQAWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++P +Y+LS+IAIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPIASADFAPFVYSLSVIAIIYTSLVALMQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QGL+G++  +L HG +S ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAANAQGLQGAIFQMLSHGLISGALFLCVGVVYDRMHTREITAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV +  FT+AN+GLPGTS F+GEF+ L+G+ Q +    IF+ +G+ILSA+Y LW Y R
Sbjct: 372 KYAVAMLIFTMANVGLPGTSGFVGEFLTLLGVFQVNSWVAIFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           +IFG L++   + + D+S++E   L PLV+L +  G+YP
Sbjct: 432 VIFGALEKESLRQILDLSRREKALLYPLVVLVIFFGVYP 470


emb|CAM77662.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Magnetospirillum gryphiswaldense MSR-1]
(504 aa)

Score: 468 bits (1204), Expect: 2.92496e-129
Length: 476, Idn/Pos/Gap = 224/336/4 (47%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRF---FSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PLLG + I+ I     V+ R     +L+ S  TF++++++   FD +   FQ   S   L
Sbjct:  14 PLLGALFILAIRGEAQVVARNARNVALLTSVATFVVSLFILGYFDAASAEFQLKESAVWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS++F++L + L  +C L +  A E+  KE+++ F ++E++++  F 
Sbjct:  74 PGTAITYSMGVDGISVWFVLLATFLTPICILSSVGAVEKRVKEYMVAFLVLETMMVGMFC 133

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFEGVL+P+F IIG++G   R++ A+Y+ FLYTLLGS+L+L+A+L +YF+ 
Sbjct: 134 ALDMVLFYVFFEGVLLPMFIIIGVWGG-ARRVYAAYKLFLYTLLGSVLMLVAMLAMYFDA 192

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
            TT+I  L    F +  QL LWLAFFASFAVKVPM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 193 RTTDIPTLMAHSFPQAMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGV 252

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+G YGF+RFS+P+FP A+ Y++PL+YTLSI+A+IY SL  L Q D+KK++AYSS+AH
Sbjct: 253 LLKMGAYGFIRFSVPMFPLATEYFTPLVYTLSIVAVIYTSLVALVQEDMKKLIAYSSVAH 312

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIFS   QG+EG+L  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 313 MGYVTIGIFSMTTQGVEGALYQMLSHGVVSGALFLCVGVVYDRMHTREIARYGGLAERMP 372

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A++  F T+A++GLPGT  FIGEF++L+G+ Q +    +F+ +G++L A+Y L+ Y R
Sbjct: 373 KYALVFMFMTMASVGLPGTGGFIGEFLVLLGVFQVNTWVALFAATGLVLGAAYALYLYRR 432

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           ++FG L  +  K + D+S +E +   PL+++ + MG+YP  FL  +H ++ +L+ +
Sbjct: 433 VVFGRLTRDDLKSILDLSPREVLMFAPLIVIVIWMGIYPITFLEPMHASVAKLIDN 488


ref|YP_005188322.1| NADH dehydrogenase I subunit M [Sinorhizobium fredii HH103]
emb|CCE95497.1| NADH dehydrogenase I, M subunit [Sinorhizobium fredii HH103]
(503 aa)

Score: 467 bits (1201), Expect: 6.35505e-129
Length: 434, Idn/Pos/Gap = 228/319/2 (52%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ + + F +++Y+W  FD S   FQ +   + L    I Y LG+DGIS+ F+ LT+ L
Sbjct:  39 SLLTTIVVFGLSLYVWYQFDSSNPGFQMIEKHEWLGTG-ISYHLGIDGISVLFLPLTAFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W   E+  KE++I F ++E+L+L  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWVTIEKRLKEYMIAFLLLETLMLGVFVSLDIVLFYVFFEAGLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L   +F  + Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKYNFPRQMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYGFLRFSLP+FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P +YTLSIIAIIY SL  + Q D+KK++AYSS+AH+GYV +G F+ N+QG++G++  +L 
Sbjct: 277 PFVYTLSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREIAAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
            + L+G  + +    +F+TSG+ILSA+Y LW Y R+IFG L+++  K + D+S +E + L
Sbjct: 397 VLTLVGAFRANTWVALFATSGVILSAAYALWLYRRVIFGALEKDSLKTMLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLVILT+  G+YP
Sbjct: 457 YPLVILTIFFGVYP 470


ref|ZP_05113003.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Labrenzia alexandrii DFL-11]
gb|EEE43602.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Labrenzia alexandrii DFL-11]
(505 aa)

Score: 467 bits (1201), Expect: 6.79373e-129
Length: 476, Idn/Pos/Gap = 228/328/5 (47%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PLLG + ++ +  N       +R  +L+ + +TF +++ +W  FD S   FQFV  +  L
Sbjct:  14 PLLGVVFVLMVSGNDDQAKGQMRMVALVTTGMTFGLSLVIWAFFDYSNPGFQFVEERDWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGISL F++LT+ L+  C L +W + +   +E+++ F ++E+L++  F 
Sbjct:  74 GSN-ISYKMGVDGISLLFVVLTAFLMPFCILASWKSVQNRVREYMVAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D+++FY+FFE  LIP+F IIG++G   R++ ASY+FFLYTLLGS+L+L+AI+ +Y+  
Sbjct: 133 ALDIVVFYVFFEAGLIPMFLIIGVWGG-ARRVYASYKFFLYTLLGSVLMLVAIMAMYWTA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 192 GTTDIQELLVYQFPPEMQTWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PL+YTLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASDMFAPLVYTLSVVAIIYTSLVALAQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV LGIF+   QG++G +  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGYVTLGIFTMTPQGVQGGIFQMLSHGIVSGALFLCVGVIYDRMHTREISAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS F+GE ++LIG  Q +    +F+T G+ILSA Y L+ Y R
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFVGEILVLIGAFQVNTWVAVFATLGVILSACYALYLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           ++FG+L +   K + D+  +E + L+P++ILT+  G YP   L     ++  L+  
Sbjct: 432 VVFGSLDKESLKSILDLDLREKVILVPMIILTIFFGFYPMAILDVTQGSVDNLINQ 487


ref|YP_002825601.1| NADH dehydrogenase subunit M [Sinorhizobium fredii NGR234]
gb|ACP24848.1| NADH dehydrogenase I chain M [Sinorhizobium fredii NGR234]
(503 aa)

Score: 467 bits (1201), Expect: 7.76402e-129
Length: 434, Idn/Pos/Gap = 228/318/2 (52%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ + + F +++Y+W  FD S   FQ +   + L    I Y LG+DGIS+ F+ LT+ L
Sbjct:  39 SLLTTIVVFGLSLYVWYQFDSSNPGFQMIEKHEWLGTG-ISYHLGIDGISVLFLPLTAFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W   E   KE++I F ++E+L+L  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWVTIENRLKEYMIAFLLLETLMLGVFVSLDIVLFYVFFEAGLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L   +F  + Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKYNFPRQMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYGFLRFSLP+FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P +YTLSIIAIIY SL  + Q D+KK++AYSS+AH+GYV +G F+ N+QG++G++  +L 
Sbjct: 277 PFVYTLSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
            + L+G  + +    +F+TSG+ILSA+Y LW Y R+IFG L+++  K + D+S +E + L
Sbjct: 397 VLTLVGAFRANTWVALFATSGVILSAAYALWLYRRVIFGALEKDSLKAMLDLSTREKLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLVILT+  G+YP
Sbjct: 457 YPLVILTIFFGVYP 470


ref|ZP_01225743.1| NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans SI85-9A1]
gb|EAS51154.1| NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans SI85-9A1]
(502 aa)

Score: 466 bits (1200), Expect: 8.43962e-129
Length: 459, Idn/Pos/Gap = 231/331/5 (50%/72%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI  +  +    IR  +L+ +  TF++++++WI FD S   FQ V     L
Sbjct:  14 PLVGALLILFIRDDSELARRNIRNVALLTTLFTFVVSLWIWIDFDNSNAGFQMVERLDWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+  C L ++ + +   KE++I F ++E+L++  F 
Sbjct:  74 GGG-ITYHMGVDGISMLFVILTTFLMPFCILASFESVQTRVKEYMIAFLVLETLVVGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFYIFFEG LIP+F IIG++G + R+I ASY+FFLYT LGS+L+L+AI+ +++  
Sbjct: 133 ALDIVLFYIFFEGGLIPMFLIIGVWGGK-RRIYASYKFFLYTFLGSVLMLVAIMTMFWTA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT++I  L   DF    Q  LW AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTSSIPELLAYDFPASMQTWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASAEFAPLVFTLSVVAIIYTSLVALMQQDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QG+EG++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAANQQGVEGAIFQMLSHGLVSGALFLCVGVVYDRMHTREIAAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A  +  FT+AN+GLPGTS F+GEF+ LIG+ Q +    IF+ +G+ILSA+Y LW Y R
Sbjct: 372 HYAAAMLIFTMANVGLPGTSGFVGEFLTLIGVFQVNSWVAIFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           ++FG L++   + + D+S +E + L PL++L +  G+YP
Sbjct: 432 VVFGALEKESLRSILDLSGREKILLYPLIVLVIFFGVYP 470


ref|ZP_18918469.1| NADH-ubiquinone oxidoreductase chain M [Caenispirillum salinarum AK4]
gb|EKV30843.1| NADH-ubiquinone oxidoreductase chain M [Caenispirillum salinarum AK4]
(504 aa)

Score: 466 bits (1198), Expect: 1.42762e-128
Length: 484, Idn/Pos/Gap = 229/337/4 (47%/69%/0%)

Query:  10 LLIWINNFPLLGCIIIIFIPRNQLVLI---RFFSLIISSLTFLITIYLWILFDESYFYFQ  66
           LL  I   PL+G   I+F+   +  +    R  +L+ S  TF+++++LW  FD +   +Q
Sbjct:   6 LLTIITFLPLVGAGFILFVRGEEAQVAANARNVALLTSVATFILSLFLWFGFDNTTAEYQ  65

Query:  67 FVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIE 126
           F   ++ L    I Y +G+DGISLFF++L++ L  +C L +W A  +  KE++I F ++E
Sbjct:  66 FTEQQEWLPAFNIGYSMGIDGISLFFVLLSTFLTPICILSSWEAVTKRVKEYMIAFLVLE 125

Query: 127 SLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIA 186
           ++++  F  +D  LFYIFFEGVLIP+F IIG++G   R++ A+++FFLYTLLGS+L+L+A
Sbjct: 126 TMMVGMFCALDAFLFYIFFEGVLIPMFIIIGVWGG-ARRVYAAFKFFLYTLLGSVLMLLA 184

Query: 187 ILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTS 246
            L +YF  GT++I  L   DF    Q+ LWLA FASFAVKVPM P H WLP+AH EAPT+
Sbjct: 185 FLTMYFTAGTSDIASLMAYDFAYGMQIWLWLAIFASFAVKVPMWPVHTWLPDAHVEAPTA 244

Query: 247 GSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKI 306
           GS+ILAG+LLK+GGYGFLRFS+P+ P A+  ++PL+YTLS++AI+Y S+  L Q D+KK+
Sbjct: 245 GSVILAGVLLKMGGYGFLRFSVPMLPEATEAFTPLVYTLSVVAIVYTSMVALVQNDMKKM 304

Query: 307 VAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYY 366
           +AYSS+AH+G V +GIF+   Q +EG++  +L HG VS ALFLCVGV+YDR  TR +  Y
Sbjct: 305 IAYSSVAHMGMVTIGIFALTQQAVEGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIARY 364

Query: 367 SGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSAS 426
            GL   +P +A++   F LA++GLPGTS F+GEF+I++G+ Q +    + + +G+IL A 
Sbjct: 365 GGLANNMPRYALVFMIFMLASVGLPGTSGFVGEFLIILGVFQVNTWVALLAATGLILGAM 424

Query: 427 YCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILR 486
           Y LW Y ++IFG L+++  K + D+SK+E   L PLV+L L MG+YP  FL  + + +  
Sbjct: 425 YMLWLYRQVIFGKLEKDDVKAMLDLSKREIAILAPLVVLVLWMGIYPASFLDPMSVAVEN 484

Query: 487 LLTH 490
           L+T+
Sbjct: 485 LITN 488


ref|YP_673596.1| NADH dehydrogenase subunit M [Chelativorans sp. BNC1]
gb|ABG62431.1| NADH dehydrogenase subunit M [Chelativorans sp. BNC1]
(501 aa)

Score: 465 bits (1197), Expect: 1.99323e-128
Length: 477, Idn/Pos/Gap = 227/335/5 (47%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G  +I+ I  +       IR  +L+ +  TF++++++WI FD +   FQ V  ++ L
Sbjct:  14 PLVGAFLILLIRDDGQGARRNIRNVALLTTVFTFILSLFIWIGFDYTTPGFQMVEKREWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+  C L +W A +   KE++I F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPFCILASWEAIDSRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTL GS+L+L+A++ +++++
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLAGSVLMLLAMMAMFWQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F  + Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPTLLTHAFPVQMQYWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS  ++P ++TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPEASAEFAPFVFTLSVVAIIYTSLVAMMQDDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNEQGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREISAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS F+GEF+ L    Q +     F+T+G++LSA+Y LW Y R
Sbjct: 372 KYAVAFMVFTMANVGLPGTSGFVGEFLTLFAAFQVNTWVAFFATTGVVLSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG L +   K L D+S +E   L PLV L +  G+YP+  + +   ++  LL H+
Sbjct: 432 VIFGALTKESLKGLTDLSLREKTILYPLVALVIFFGVYPSALIDTTTASVSALLDHV 488


ref|YP_006280924.1| NADH dehydrogenase subunit 4 (mitochondrion) [Spirodela polyrhiza]
gb|AFI54933.1| NADH dehydrogenase subunit 4 (mitochondrion) [Spirodela polyrhiza]
(493 aa)

Score: 465 bits (1197), Expect: 2.13082e-128
Length: 473, Idn/Pos/Gap = 232/319/2 (49%/67%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DGISLFF+ILT+ LI +C  + W++   Y KE++    + E L++     +D
Sbjct:  79 NIHLYMGIDGISLFFVILTTFLIPICISVGWSSMRSYGKEYITASLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+  IIG++GSR RKI+A+YQFFLYT LGS+ +L+AI LI  +TGTT
Sbjct: 139 PLLFYVLPESVPIPMI-IIGVWGSRQRKIKAAYQFFLYTSLGSVFMLLAIPLILLQTGTT 197

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +   L   +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI LK
Sbjct: 198 DSQILLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLK 257

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+FP A+   +P IYT S IAIIY   TT RQ+DLKKI+AYS +AH+  
Sbjct: 258 LGTHGFLRFSIPMFPEATLRSTPFIYTPSAIAIIYTPSTTSRQIDLKKIIAYSPVAHMNL 317

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+ S N+QG+ GS+L +  HG V  ALFLCVGVLYDR+KTR+ +YY G  + +P  +
Sbjct: 318 VTIGM-SSNIQGIGGSILPMSSHGPVPPALFLCVGVLYDRHKTRLARYYGGSVSTMPNLS 376

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF IL+G  Q + +    +  G+IL A+Y LW YNR + 
Sbjct: 377 TISFSSTLANMSSPGTSSFIGEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVS 436

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GNLK ++     D + +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 437 GNLKPDFLHKFSDPNGREVSIFLPFIVGLVRMGVHPKVFPDCMHTSVSNLVQH 489


ref|ZP_11124181.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor pacificus pht-3B]
gb|EKF20196.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor pacificus pht-3B]
(504 aa)

Score: 464 bits (1195), Expect: 3.39994e-128
Length: 477, Idn/Pos/Gap = 225/340/5 (47%/71%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G  +I+ I  +       IR  +L+ +  TF++++++W+ FD S   FQ V  ++ L
Sbjct:  14 PLVGAFLILLIREDGPGARRNIRNVALLTTVFTFVLSLFIWLGFDASVPGFQMVEKREWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
           +   I Y +GVDGIS+ F+ILT+ L+  C L +W A ++  KE++I F ++E+L++  F 
Sbjct:  74 D-SGISYHMGVDGISMLFVILTTFLMPFCILASWEAIDKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+A++ ++++ 
Sbjct: 133 ALDVVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAMMAMFWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPTLLTHVFPTGMQYWLWVAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS   +PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPVASIDLAPLVFTLSVVAIIYTSLVALMQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QG++G++  ++ HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFALNEQGVQGAIFQMISHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ L+ + + +    +F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYATVFLIFTMANVGLPGTSGFVGEFLTLLAVFEVNTWVALFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E + L PLV+L +  G+YP   L +  +++  L+ ++
Sbjct: 432 VVFGSLTKESLKSLLDLSTREKLILYPLVVLVIFFGVYPAPLLDATAVSVEALVNNV 488


gb|AEP20739.1| NADH dehydrogenase subunit 4 (mitochondrion) [endosymbiont of Kryptoperidinium foliaceum]
(495 aa)

Score: 464 bits (1195), Expect: 3.75799e-128
Length: 487, Idn/Pos/Gap = 246/352/0 (50%/72%/0%)

Query:   5 FFHDSLLIWINNFPLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFY  64
           F++  +L + +  PL+G ++++FI   Q  L++  +L  SSL FLI + +W  F +S   
Sbjct:   7 FYYQDILFYTSLIPLIGILLLVFISSEQQKLLKVVALNFSSLPFLIFLCIWGAFKKSVGT  66

Query:  65 FQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFM 124
           FQFV +   +    +   LG+DGISLFF++LT+LLI +C L++WN+     K +LI F +
Sbjct:  67 FQFVTTLLWIPVINLNINLGIDGISLFFLLLTTLLIPLCILISWNSINSNLKGYLISFLI 126

Query: 125 IESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLIL 184
           IE  L+  F  +DLL+FYIFFE +LIP+F ++GI+GSR RK+ ASY FFLYTLLGS+++L
Sbjct: 127 IEFFLIGVFCVLDLLMFYIFFESILIPMFLVVGIWGSRERKMLASYYFFLYTLLGSVVML 186

Query: 185 IAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAP 244
           ++IL IY + GTT+   L    F + +Q +LW  FF +FA KVPM+P H+WLPEAH EAP
Sbjct: 187 LSILYIYNQVGTTDYEILLTFVFSDFEQKILWFTFFLAFAAKVPMMPVHLWLPEAHVEAP 246

Query: 245 TSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLK 304
           T+GS+ILAG+LLKLG YGF+RFSLPLFP ASFY++P +YT+S++ I+YASLT +RQ D K
Sbjct: 247 TAGSVILAGVLLKLGTYGFIRFSLPLFPQASFYFTPFVYTISLLGIVYASLTAIRQTDFK 306

Query: 305 KIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILK 364
           +I+AY+S+AH+  V+LGIFSFN  G+EG++L  L HGFV+SALF+ +GV+Y+RY+TR++K
Sbjct: 307 RIIAYTSVAHMNVVMLGIFSFNNVGIEGAILQSLSHGFVASALFVIIGVVYERYRTRLVK 366

Query: 365 YYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILS 424
           YY GL   +PL+  +  FFT+ANIG PGTS FIGEF+I  G  + +   T F  +G+IL 
Sbjct: 367 YYGGLVHTMPLYISVFLFFTMANIGFPGTSGFIGEFLIFAGSFKVNSSITFFGATGMILG 426

Query: 425 ASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITI 484
             Y LW +NR+ +GNLK  Y K   D++K+E    +PL+  TLI+GL P+I L+SIH+++
Sbjct: 427 GCYALWLFNRIAYGNLKSQYIKQTLDLNKREVFIFVPLICYTLILGLTPDICLNSIHMSV 486

Query: 485 LRLLTHI 491
             L+ ++
Sbjct: 487 NNLVENM 493


gb|AEY83721.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Aneura pinguis]
(437 aa)

Score: 464 bits (1194), Expect: 4.05105e-128
Length: 435, Idn/Pos/Gap = 225/314/0 (51%/72%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +TFL +++LWI  +     FQFV + + L +  I +++G+DGIS FF+ILT+ L  + 
Sbjct:   2 SLITFLYSLFLWIRLENDTAKFQFVETIRWLPYPNINFYIGIDGISSFFVILTTFLTPIR  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+   + + Y KE++I F + ES  +    ++DLL+FY+F E VLIP+F IIG+ GSR 
Sbjct:  62 ILVGLYSVKSYEKEYMIAFPVRESFPIAVSCSLDLLIFYVFPESVLIPMFIIIGVRGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
           RKI+A+Y+FFLYTL+GSL +L+AIL I F+TGTT+   L   +F ER+Q+LL +A FASF
Sbjct: 122 RKIKAAYRFFLYTLMGSLFMLLAILFISFQTGTTDPQILLTTEFSERRQILLRIALFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
            VKVPM+P HI LPEAH EAPT+GS+  AGIL K G YGFLRFS+P+FP A+ + +P IY
Sbjct: 182 PVKVPMVPVHIRLPEAHVEAPTAGSVTSAGILSKSGTYGFLRFSIPMFPEATLHSTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
             S+IAIIY SLTT+RQ+DLKKI+AYS +AH+ +V +G+FS N+QG+EGS+LL+L HG V
Sbjct: 242 VPSVIAIIYTSLTTIRQIDLKKIIAYSPVAHMNFVTIGMFSPNIQGIEGSILLMLSHGLV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSA   CVG  YDR+KTRI+KYY GL + +P+ + +  FFTLAN+ LPGTS+FIGEF+IL
Sbjct: 302 SSAPSSCVGAPYDRHKTRIVKYYGGLVSTMPISSTIFLFFTLANMSLPGTSSFIGEFLIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y  W YNR++FGN K N+     D +++E +  +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSPWLYNRVVFGNSKPNFILKFSDSNRREVLIFLPFI 421

Query: 464 ILTLIMGLYPNIFLH 478
              + MG+YP +FL 
Sbjct: 422 AGVIRMGVYPEVFLE 436


emb|CAC48233.1| NADH dehydrogenase subunit 4 [Takakia lepidozioides]
(418 aa)

Score: 464 bits (1194), Expect: 4.29471e-128
Length: 414, Idn/Pos/Gap = 218/307/0 (52%/74%/0%)

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L +  I + +G+DGISLF ++LT+ LI +   + W++ + Y KE++I F + ES ++  F
Sbjct:   5 LPYSNINFHIGIDGISLFSVVLTTFLIPIRIPVGWSSIKSYKKEYMIAFLIRESFMIAVF  64

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
              DLLL Y+F E VLIP+F IIG++GSR RKIRA+YQFFLYTLLGS+ +L+AIL I+ +
Sbjct:  65 RMPDLLLSYVFLESVLIPMFIIIGVWGSRRRKIRAAYQFFLYTLLGSVFMLLAILFIFSQ 124

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
           TGTT++  L   +F ER+Q+LLW+AFFAS +VKVPM+P HI LPEAH EAPT+GS+ILAG
Sbjct: 125 TGTTDLQILLTTEFSERRQILLWIAFFASLSVKVPMVPVHIRLPEAHVEAPTAGSVILAG 184

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLKLG YGF RFS+P+FP A+ + +P IYT S+IAIIY SLTT+RQ+DLKKI+A+S +A
Sbjct: 185 ILLKLGTYGFSRFSIPMFPEATPHSTPFIYTPSVIAIIYTSLTTIRQIDLKKIIAHSPVA 244

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+ +V +G+FS N+QG+EGS+L +  HG V SAL   VG  YDR+KTR++KYY GL + +
Sbjct: 245 HMNFVTIGMFSPNIQGIEGSILPMSSHGPVPSALSPRVGAPYDRHKTRLVKYYGGLVSTM 304

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P+F  +  F TLAN+  PGTS+FIGEF+IL+G  Q + +    +  G+IL A+Y LW YN
Sbjct: 305 PMFPTIPLFSTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWPYN 364

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRL 487
           R+IFGN K N+ +   D++++E +  +P ++  + MG+YP +F   +H ++  L
Sbjct: 365 RVIFGNFKPNFLQKFSDLNRREVLIFLPFIVGVIRMGVYPEVFPECMHTSVSNL 418


ref|YP_005090381.1| NADH dehydrogenase subunit 4 (mitochondrion) [Phoenix dactylifera]
gb|AEM43921.1| NADH dehydrogenase subunit 4 (mitochondrion) [Phoenix dactylifera]
(495 aa)

Score: 464 bits (1193), Expect: 6.19975e-128
Length: 473, Idn/Pos/Gap = 227/314/0 (47%/66%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+LG I  +FIP +++  IR   L  S +TFL      I FD S    QFV S + L +E
Sbjct:  19 PVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYE  78

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            I  ++G+DG+SLFF+ILT+ LI +C  + W+    Y KE++    + E L++     +D
Sbjct:  79 NIHLYIGIDGLSLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVSCMLD 138

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
            LLFY+  E V IP+  IIG++GSR RKI+A+YQFFLYT LGS+ +L+AI LI  +TGTT
Sbjct: 139 PLLFYVLPESVPIPMLIIIGVWGSRQRKIKAAYQFFLYTSLGSVFMLLAIPLILLQTGTT 198

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +   L   +F ER+Q+ LW+A FASFAVKVPM+P HIWLPEAH EAPT+GS+ILAGI  K
Sbjct: 199 DSQILLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPSK 258

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           LG +GFLRFS+P+FP A+   +P IYT S IAIIY   TT RQ+DLKKI+AYS +AH+  
Sbjct: 259 LGTHGFLRFSIPMFPEATLRSTPFIYTPSAIAIIYTPSTTSRQIDLKKIIAYSPVAHMNL 318

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +G+ S N+QG+ GS+  +  HG V  ALFLCVGVLYDR+KTR+ +YY G  + +P   
Sbjct: 319 VTIGMSSSNIQGIGGSIPPMSSHGLVPPALFLCVGVLYDRHKTRLARYYGGSVSTMPNLP 378

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
            + F  TLAN+  PGTS+FIGEF I +G  Q + +    +  G+IL A+Y LW YNR++ 
Sbjct: 379 TISFSSTLANMSSPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVS 438

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           GN K ++     D + +E    +P ++  + MG++P +F   +H ++  L+ H
Sbjct: 439 GNFKPDFLHKFSDPNGREVSIFLPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491


ref|ZP_11155224.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor indicus C115]
gb|EKF42679.1| NADH:ubiquinone oxidoreductase subunit M [Nitratireductor indicus C115]
(505 aa)

Score: 463 bits (1192), Expect: 7.70174e-128
Length: 477, Idn/Pos/Gap = 228/334/5 (47%/70%/1%)

Query:  18 PLLGCIIIIFIPRN---QLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G  +I+ I  +       IR  +L+ +  TF++++++W  FD S   FQ V   + L
Sbjct:  14 PLVGAFLILLIREDGNGARRNIRNVALLTTVFTFVLSLFIWAGFDASSPGFQMVEKSEWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+  C L +W A E   KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISMLFVILTTFLMPFCILASWEAIEHRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D++LFY+FFE  LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+A++ +Y++ 
Sbjct: 133 ALDIVLFYVFFEAGLIPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAMMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L    F    Q  LW AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPALLTHVFPVGMQYWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS   +PL++TLS++AIIY SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPVASMDLAPLVFTLSVVAIIYTSLVALMQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAMNQQGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +A +   FT+AN+GLPGTS F+GEF+ L+ + + +    +F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYATVFMIFTMANVGLPGTSGFVGEFLTLLAVFEVNTWIALFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG L +   K L D+S +E + L PLV+L +  G+YP   L +  +++  L+ ++
Sbjct: 432 VVFGALTKESLKGLLDLSAREKLILYPLVVLVIFFGVYPAPILDATAVSVEALVNNV 488


ref|YP_448627.1| NADH dehydrogenase subunit 4 [Fucus vesiculosus]
gb|AAR29321.1| NADH dehydrogenase subunit 4 (mitochondrion) [Fucus vesiculosus]
(482 aa)

Score: 463 bits (1191), Expect: 8.65605e-128
Length: 460, Idn/Pos/Gap = 233/332/4 (50%/72%/0%)

Query:  29 PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGI  88
           P +  +++R +SL  ++L F+++++LW+ FD+S   FQF+     L    I   LGVDGI
Sbjct:  21 PSSSKLILRQYSLFTTTLVFILSLFLWLGFDQSTPKFQFITDSLWLPLANINLILGVDGI  80

Query:  89 SLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGV 148
           SLFF++LT+L+  +C L +W  N+   K +LI F  +E +LL  F+++DLL FYIFFE V
Sbjct:  81 SLFFVLLTTLIFPLCLLASWTFNKGDLKTYLISFLSMELVLLLVFTSLDLLFFYIFFEAV 140

Query: 149 LIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFY 208
           LIP+F +IGI+GSR RKIRA+Y FFLYTLLGSL +L+ ++ IY   G+T+   L  + F 
Sbjct: 141 LIPMFLVIGIYGSRQRKIRAAYMFFLYTLLGSLFMLVGVVYIYLSVGSTSYEALSVIKFS 200

Query: 209 ERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSL 268
              Q  LWLAFFASFA KVPM+P HIWLPEAH EAPT+GS+ILAGILLKLG YGFLRFSL
Sbjct: 201 SYNQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSL 260

Query: 269 PLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQ 328
            LFP AS Y++P I++LS++ ++Y SLT +RQ DLK+++AY+S+AH+  V++G+F+  V 
Sbjct: 261 GLFPEASIYFTPFIFSLSVLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVI 320

Query: 329 GLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANI 388
           G+E ++L  L HGFVSSALFL +GVLYDR+ TR +KYY GLT  +P+F ++  FFT+AN+
Sbjct: 321 GIEAAILQSLSHGFVSSALFLIIGVLYDRWHTRGVKYYGGLTHTMPIFIIIFLFFTMANL 380

Query: 389 GLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFL 448
           GLPGTS+F+GEF++ +   + +  +  F+ + +IL   Y LW +NR+ +GN+K       
Sbjct: 381 GLPGTSSFVGEFLLFVSAFEANTTSCFFAATSMILGGVYSLWLFNRIAYGNIK----LIG 436

Query: 449 QDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
            D+S +EF+   PLV+ TL+MG+YP+IF   +H ++  L+
Sbjct: 437 SDLSYREFVVFFPLVLGTLVMGIYPDIFFCPMHASVSNLV 476


ref|ZP_10733634.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium sp. CF122]
gb|EJL57413.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium sp. CF122]
(503 aa)

Score: 463 bits (1191), Expect: 9.64777e-128
Length: 434, Idn/Pos/Gap = 226/319/2 (52%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF+++++LWI FD +   FQ +     L    I Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLITTVATFVLSLFLWIGFDNANPGFQMIEKHGWLGTG-ISYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  K+++I F ++E +++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKDYMIAFLILEVMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F  + Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDIQALLAYQFPPQMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS +++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASEFFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ LS+IAIIY SL  L Q D+KK++AYSS+AH+GYV +GIF+ N QGL+GS+  +L 
Sbjct: 277 PLVFALSVIAIIYTSLVALMQDDMKKLIAYSSVAHMGYVTMGIFAANAQGLQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PL+ LT+  G+YP
Sbjct: 457 YPLIALTIFFGVYP 470


ref|YP_001524596.1| proton-translocating NADH-quinone oxidoreductase chain M protein [Azorhizobium caulinodans ORS 571]
dbj|BAF87678.1| proton-translocating NADH-quinone oxidoreductase chain M protein [Azorhizobium caulinodans ORS 571]
(504 aa)

Score: 462 bits (1190), Expect: 1.26004e-127
Length: 480, Idn/Pos/Gap = 233/337/11 (48%/70%/2%)

Query:  18 PLLGCIIIIFIPRNQLVLIR---FFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G + I  +     V  R   + +L  + +TF+++++L   FD +   FQFV  K  L
Sbjct:  14 PLVGALFIFVVRGEDEVAARNARWVALWTTLVTFVVSLFLLPGFDPAAPGFQFVEKKPWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
              +  Y +GVDGISL  +IL++ L+  C L +W++ ++  KE++I F ++E+L++  F 
Sbjct:  74 G-GIAAYHMGVDGISLSLVILSTFLMPFCILASWDSVKKRVKEYMICFLVLETLMVGTFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFY FFE  LIP+F IIG++G   R+I AS++FFLYTLLGS+L+++AI+ +Y++ 
Sbjct: 133 ALDLVLFYFFFEAALIPMFLIIGVWGG-ARRIYASFKFFLYTLLGSVLMMLAIMAMYWKA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT++  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 192 GTTDVPTLMQYGFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGF+RFSLP+FP AS  ++PL+YTLS++AIIY SL  + Q D+KK++AYSSIAH
Sbjct: 252 LLKMGGYGFIRFSLPMFPDASHLFAPLVYTLSVVAIIYTSLVAMVQEDIKKLIAYSSIAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +G+FS N  GL+G++ L++ HGFVS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGLFSMNEAGLQGAMFLMISHGFVSGALFLCVGVIYDRMHTREIAAYGGLVKRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
           L+AV +  FT+AN+GLPGTS F+GEF+ ++   Q +     F+ +G+ILSA+Y LW Y R
Sbjct: 372 LYAVAMMVFTMANVGLPGTSGFVGEFLTMLSAFQRNTWVAFFAATGVILSAAYALWLYWR 431

Query: 435 LIFGNL-KENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFL----HSIHITILRLLT 489
           +IFG L KEN  K L+D++ +E   +IPL+ LT+I G +P   L    H+++  + R  T
Sbjct: 432 VIFGPLEKENLMK-LKDLNAREIGIMIPLIALTIIFGFWPAPVLDMTSHAVNFVVARTET 490


ref|YP_003756052.1| proton-translocating NADH-quinone oxidoreductase subunit M [Hyphomicrobium denitrificans ATCC 51888]
gb|ADJ23731.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hyphomicrobium denitrificans ATCC 51888]
(495 aa)

Score: 462 bits (1190), Expect: 1.42803e-127
Length: 473, Idn/Pos/Gap = 233/332/3 (49%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G ++I           R+ +L  + +TF +++ +W  FD +   FQFV     L   
Sbjct:  12 PLVGALLIAVQNAEAKQNARWIALWTTLVTFAVSLLIWWNFDTTQSGFQFVEEHAWLGS-  70

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            ++Y LGVDGIS+ FIILT+ L+ +C L +W + E   KE++I F ++E+L+L  FS +D
Sbjct:  71 -LKYKLGVDGISMLFIILTTFLMPLCILASWVSVENRVKEYMIAFLVLETLMLGVFSALD 129

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           L+LFY+FFEG LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+A++ +Y+  GTT
Sbjct: 130 LVLFYLFFEGGLIPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAMMAMYWHAGTT 188

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +I  L    F    Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGILLK
Sbjct: 189 DIPTLLQTKFPPDMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 248

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFSLP+FP AS   +PL+++LSIIAIIY SL  L Q D+KK++AYSS+AH+GY
Sbjct: 249 MGGYGFLRFSLPMFPNASADLAPLVFSLSIIAIIYTSLVALVQEDMKKLIAYSSVAHMGY 308

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIF+ + QG++G++  +L HG VSSALFLCVGV+YDR  TR +  Y GL   +P +A
Sbjct: 309 VTMGIFTGSQQGIDGAIFQMLSHGLVSSALFLCVGVIYDRMHTREISAYGGLVERMPKYA 368

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
           V    FT+AN+GLPGTS FIGEF+ L+   +++    I +T+GIILSA+Y L+ Y R++F
Sbjct: 369 VAFMIFTMANVGLPGTSGFIGEFLTLMAAFKSNTWVAILATTGIILSAAYALYLYRRVVF 428

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           G L++   + + D+S +E   L PL++LT+  G YP   L     ++  L+ +
Sbjct: 429 GVLEKANLRSILDLSPREIAILAPLILLTIYYGFYPAPVLDVTAASVKNLVQN 481


ref|YP_001414477.1| proton-translocating NADH-quinone oxidoreductase subunit M [Parvibaculum lavamentivorans DS-1]
gb|ABS64820.1| proton-translocating NADH-quinone oxidoreductase, chain M [Parvibaculum lavamentivorans DS-1]
(514 aa)

Score: 462 bits (1190), Expect: 1.45206e-127
Length: 476, Idn/Pos/Gap = 225/334/5 (47%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVLIR---FFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+    ++  + R   + +L  +  TFL+++Y+W  FD +   FQFV   + L
Sbjct:  14 PLIGALVILATRGDEATVARNARYVALWTTGATFLVSLYIWWKFDPTTADFQFVQQTEWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+  C L +W +     KE++I F ++E+L++  F 
Sbjct:  74 G-GAINYHMGVDGISMLFVILTTFLMPACILASWTSINTRVKEYMIAFLVLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFY+FFEG LIP+F IIG++G   R+I AS++FFLYT +GS+L+L+AI+ +Y+  
Sbjct: 133 ALDLVLFYLFFEGGLIPMFLIIGVWGG-ARRIYASFKFFLYTFVGSVLMLLAIMAMYWSA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L   DF    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTSIPVLLEHDFPAGMQFWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+GGYGFLRFSLP+FP AS   + L++ LS+IAI+Y SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKMGGYGFLRFSLPMFPVASADLAWLVFGLSVIAIVYTSLVALVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +G+V +GIF+ N QG++G +  +L HG+VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGFVTMGIFAANQQGVQGGIFQMLSHGWVSGALFLCVGVIYDRIHTREIAAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
           L+AV    FT+AN+GLPGTS FIGEF+ ++G+ + +      + +G+IL+A Y L+ Y R
Sbjct: 372 LYAVAFMVFTMANVGLPGTSGFIGEFLTILGVFKVNTWVAAIAATGVILAAGYALYLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L+++  K + D++++E + + PL+  T+  G+YP+  +    +++  L+T+
Sbjct: 432 IIFGVLEKDSLKSIADLNRREVITIAPLLAATIFFGVYPSPIMDVTAVSVENLVTN 487


ref|NP_659278.1| NADH dehydrogenase subunit 4 [Laminaria digitata]
emb|CAC87974.1| NADH dehydrogenase subunit 4 [Laminaria digitata]
(483 aa)

Score: 462 bits (1189), Expect: 1.52661e-127
Length: 469, Idn/Pos/Gap = 249/342/5 (53%/72%/1%)

Query:  21 GCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQ  80
           G + +IFIP +Q +++R F+L I+S  F+ +++LW+ FD+S   FQFV+    L    I 
Sbjct:  13 GIVGLIFIPSSQKLIMRQFALAITSAVFVSSLFLWLGFDQSTPKFQFVVDSLWLPLANIN  72

Query:  81 YFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLL 140
             LGVDGISLFFIILT+L+  +C L +W+ N+   K +LI F  +E +LL  F+ +DLL 
Sbjct:  73 LILGVDGISLFFIILTTLIFPLCLLASWSFNKGEVKPYLISFLGMELVLLLVFTNLDLLF 132

Query: 141 FYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNIN 200
           FYIFFE VLIP+F +IGI+GSR RKIRA+Y FFLYTLLGSL +LI I+ IY   G+TN  
Sbjct: 133 FYIFFEAVLIPMFLVIGIYGSRERKIRAAYMFFLYTLLGSLFMLIGIIYIYLFAGSTNYE 192

Query: 201 FLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSG-SIILAGILLKLG 259
            L  ++F    Q  LW AFFASFA KVPM+P HIWLPEAH EAPT+G  IILAGILLKLG
Sbjct: 193 ALSVINFSSYDQKWLWFAFFASFAAKVPMLPVHIWLPEAHVEAPTAGFKIILAGILLKLG 252

Query: 260 GYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVI 319
            YGFLRFSL LFP AS Y++P I++LS++ ++Y SLT +RQ DLK+++AY+S+AH+  V+
Sbjct: 253 SYGFLRFSLGLFPLASVYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVM 312

Query: 320 LGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVL 379
           +G+F+  V G+E ++L  L HGFVSSALFL +GVLYDR+ +R++KYY GLT  +P+F ++
Sbjct: 313 IGLFTGTVIGVEAAILQRLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIII 372

Query: 380 LFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGN 439
             FFT+AN+GLPGTS+FIGEF++L+   + +  A  F+ + +IL   Y LW +NR+ +GN
Sbjct: 373 FLFFTMANLGLPGTSSFIGEFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGN 432

Query: 440 LKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           +K   F    D+S +EFM  +PLV+ TL MG+YPN+F  ++H T+  L+
Sbjct: 433 IKMIGF----DLSFREFMVFLPLVLGTLFMGIYPNLFFSAMHATVSNLV 477


ref|ZP_10460433.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella washoensis 085-0475]
gb|EJF86011.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella washoensis 085-0475]
(498 aa)

Score: 462 bits (1189), Expect: 1.71577e-127
Length: 477, Idn/Pos/Gap = 234/336/5 (49%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G I+I+FI  N  V    IR  + + S   F+I++ +W  FD +  +FQ V     L
Sbjct:  23 PLVGVILILFIKDNSEVARHNIRNVAFLTSFFVFIISLIIWAGFDHTNAHFQMVEKFNWL  82

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W   ++  K ++I F ++E  ++  F 
Sbjct:  83 GGG-ISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAVIGVFC 141

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+AI+ +Y+E 
Sbjct: 142 ALDAILFYVFFEGSLIPMFIIIGVWGG-ARRVYASMKFFLYTLLGSVLMLVAIMAMYWEA 200

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L N  F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 201 GTLDIPTLLNYQFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 260

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PL++TLS+IAIIY SL  L Q D+KK++AYSSIAH
Sbjct: 261 LLKLGGYGFLRFSLPMFPLASADFAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAH 320

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N Q ++G++  +L HG VS+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 321 MGYVTMGIFAANEQSIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMP 380

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ Q + +  +F+T+G+ILSA+Y L+ Y R
Sbjct: 381 KYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVFATTGVILSAAYALYLYRR 440

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E + L P+VILT+  G+YP   L +   ++  L+  +
Sbjct: 441 VVFGSLDKENLKVLLDLSLREKIILYPMVILTIFFGIYPTPILKATAFSVEALINKL 497


ref|ZP_02187175.1| NADH dehydrogenase subunit M [alpha proteobacterium BAL199]
gb|EDP66357.1| NADH dehydrogenase subunit M [alpha proteobacterium BAL199]
(504 aa)

Score: 462 bits (1189), Expect: 1.80385e-127
Length: 490, Idn/Pos/Gap = 227/340/17 (46%/69%/3%)

Query:  15 NNFPLLGCIIIIFIP----------RNQLVLI----RFFSLIISSLTFLITIYLWILFDE  60
           +N PLL   ++IF+P          R +   +    R+ +L+IS+  FL+++ +W  FD 
Sbjct:   3 SNAPLLS--LVIFLPLVGVFFILLTRGEEAQVAINCRWQALLISTAVFLVSLLIWYNFDP  60

Query:  61 SYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLI 120
           +   FQ V     +    I Y +GVDGIS++F++L++LL  +C L +W A +   KE++I
Sbjct:  61 TTADFQMVERYDWIPGSSIAYHVGVDGISMWFVLLSTLLTPICILASWEAVQSRVKEYMI 120

Query: 121 LFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGS 180
            F ++E+L++  F  +D+L+FY+FFEGVLIP+F IIG++G + R++ A+++FFLYTL GS
Sbjct: 121 AFLVLETLMVGMFCALDILVFYVFFEGVLIPMFLIIGVWGGQ-RRVYAAFKFFLYTLGGS 179

Query: 181 LLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAH 240
           +L++IAIL +Y+E GTT+I  L    F    Q  LWLAFFASFAVKVPM P H WLP+AH
Sbjct: 180 VLMMIAILAMYWEAGTTDIPTLLVFKFAPALQTWLWLAFFASFAVKVPMWPVHTWLPDAH 239

Query: 241 AEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQ 300
            EAPT+GS+ILAG+LLK+GGYGFLRFS+P+FP AS Y++PL++ LS++A+IY SL  L Q
Sbjct: 240 VEAPTAGSVILAGVLLKMGGYGFLRFSIPMFPEASDYFAPLVFALSVVAVIYTSLVALVQ 299

Query: 301 VDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKT 360
            D+KK++AYSS+AH+G+V +G+F+   QG+EGS+  +L HG VS ALFLCVGV+YDR  T
Sbjct: 300 QDMKKLIAYSSVAHMGFVTIGMFTLTTQGVEGSIFQMLSHGVVSGALFLCVGVVYDRLHT 359

Query: 361 RILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSG 420
           R +  Y GL   +P +A++   FTLA++GLPGTS F+GE +IL G  + +      + +G
Sbjct: 360 REISAYGGLANNMPRYALVFMVFTLASVGLPGTSGFVGELLILTGAFKVNTWLAALAATG 419

Query: 421 IILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSI 480
           +IL A+Y L+ Y R++FG L ++  K + D+S +E     PL++L   MG+YP+ F+  +
Sbjct: 420 LILGAAYMLYLYRRVVFGVLDKDSVKAMLDLSPREIALFAPLIVLVFWMGIYPSTFIDMM 479

Query: 481 HITILRLLTH 490
            +++  L+T+
Sbjct: 480 SVSVDNLITN 489


ref|YP_469143.1| NADH dehydrogenase subunit M [Rhizobium etli CFN 42]
gb|ABC90416.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN 42]
(503 aa)

Score: 462 bits (1188), Expect: 2.13144e-127
Length: 444, Idn/Pos/Gap = 227/324/6 (51%/72%/1%)

Query:  30 RNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGIS  89
           RN L    + SLI +  TF++++++WI FD +   FQ +     L    I Y +GVDGIS
Sbjct:  33 RNVL----WISLITTVFTFVVSLFIWIGFDNANPGFQMLEKHDWLGTG-IGYHVGVDGIS  87

Query:  90 LFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVL 149
           + F+IL++ L+  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  L
Sbjct:  88 MLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGL 147

Query: 150 IPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYE 209
           IP+F IIG++G R R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F  
Sbjct: 148 IPMFLIIGVWGGRDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPP 206

Query: 210 RKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLP 269
             Q  LWLAFFASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL 
Sbjct: 207 ALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLG 266

Query: 270 LFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQG 329
           +FP AS Y++PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG
Sbjct: 267 MFPVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQG 326

Query: 330 LEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIG 389
           ++GS+  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+G
Sbjct: 327 VQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVG 386

Query: 390 LPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQ 449
           LPGTS FIGEF+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L 
Sbjct: 387 LPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALL 446

Query: 450 DISKKEFMALIPLVILTLIMGLYP 473
           D+S++E + L PLV LT+  G+YP
Sbjct: 447 DLSRREQLILYPLVALTIFFGVYP 470


ref|YP_005039635.1| NADH-quinone oxidoreductase subunit M [Azospirillum lipoferum 4B]
emb|CBS87418.1| NADH-quinone oxidoreductase, subunit M [Azospirillum lipoferum 4B]
(508 aa)

Score: 461 bits (1186), Expect: 3.60548e-127
Length: 475, Idn/Pos/Gap = 222/332/5 (46%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQ----LVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL+G  +I+   R      L  +R+ SL  + +TF++T+ +W  FD     +Q V     
Sbjct:  14 PLVGVALILLFCRGNSPDVLRNVRYISLWTTLVTFVLTLLVWANFDPRNPGYQMVEKAGW  73

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           +    I Y +GVDGIS+ F++L+  L+ +C L +W + +   KE+++ F  +E+L++  F
Sbjct:  74 IPEFGINYHMGVDGISVLFVVLSGFLMPLCILASWESVQVRVKEYMMAFLALETLMIGMF 133

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
             +D +LFY+FFEGVLIP+F IIG++G   R++ A+++FFLYTLLGS+L+L+AIL +YF 
Sbjct: 134 CALDFVLFYMFFEGVLIPMFLIIGVWGG-PRRVYAAFKFFLYTLLGSVLMLLAILAMYFV 192

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  +    F    QL LWLAFFASFAVKVPM P H WLP+AH EAPT+GS+ILAG
Sbjct: 193 AGTTDIPTITATQFPRNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAG 252

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           +LLK+GGYGFLRF++P+ P A+ Y++PLIYTLS++A+IY SL  L Q D+KK++AYSS+A
Sbjct: 253 VLLKMGGYGFLRFNIPILPEATEYFAPLIYTLSVVAVIYTSLVALAQEDMKKLIAYSSVA 312

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+G+V +G+F+ N QG+EGS+  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 313 HMGFVTIGMFALNQQGIEGSVFQMLSHGVVSGALFLCVGVVYDRLHTREISRYGGLVKNM 372

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +AV+  F T+A++GLPGT+ F+GEF++L+G+ Q +      + +G++L A+Y LW Y 
Sbjct: 373 PKYAVVFLFMTMASVGLPGTAGFVGEFLVLLGVFQDNTWVAALAATGMVLGAAYALWLYR 432

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           R+++G L +   K + D++ +E    +PLV + L MG+YP+ FL+    ++ +L+
Sbjct: 433 RIVYGKLVKPDVKAMFDMTPREIAVFLPLVAVVLWMGVYPSSFLNVTSASVEQLI 487


ref|ZP_10470472.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella alsatica IBS 382]
gb|EJF75908.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella alsatica IBS 382]
(498 aa)

Score: 461 bits (1186), Expect: 3.69687e-127
Length: 477, Idn/Pos/Gap = 230/337/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI  +       IR  +   +   F+I++ +W  FD +  +FQ V     L
Sbjct:  23 PLVGVLLILFIKDDSEAARYNIRNVAFFTTVFVFIISLIIWAEFDYTNTHFQMVEKYNWL  82

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
             + I Y +GVDGIS+ F++L++ L+  C L +W   ++  K ++I F ++E +++  F 
Sbjct:  83 GGD-INYHMGVDGISILFVVLSAFLLPFCILASWENVKDSLKAYMIAFLLLEVVIIGVFC 141

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+A++++Y+E 
Sbjct: 142 ALDAMLFYVFFEGSLIPMFIIIGVWGG-ARRVYASIKFFLYTLLGSVLMLVALMVMYWEA 200

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L N  F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 201 GTLDIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 260

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++P ++TLS+IAIIY SL  L Q D+KK++AYSSIAH
Sbjct: 261 LLKLGGYGFLRFSLPMFPIASADFAPFVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAH 320

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N QG++G++  +L HG +S+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 321 MGYVTMGIFASNEQGVQGAIYQMLSHGIISAALFLCVGVIYDRLHTREISAFGGLVNNMP 380

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ Q S +  +F+T+G+ILSA+Y L+ Y R
Sbjct: 381 KYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVSKLVVVFATTGVILSAAYALYLYRR 440

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           +IFG+L +   K L D+S +E   L P++ILT+  G+YP   L +I  ++  L+  +
Sbjct: 441 VIFGSLDKENLKILVDLSSREKFILYPMIILTIFFGVYPTPILKTIAFSVEALINKL 497


ref|YP_002544119.1| NADH dehydrogenase subunit M [Agrobacterium radiobacter K84]
gb|ACM26193.1| NADH-ubiquinone oxidoreductase chain M protein [Agrobacterium radiobacter K84]
(512 aa)

Score: 461 bits (1186), Expect: 3.91922e-127
Length: 460, Idn/Pos/Gap = 228/333/7 (49%/72%/1%)

Query:  18 PLLGCIIIIFI----PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL+G +I++F+    P  +  ++   SL+ +  TF++++++WI FD +   FQ +     
Sbjct:  23 PLVGVLILLFMRDDGPNGRRNILNV-SLLTTVFTFIVSLFIWIGFDNANPGFQMIEKHGW  81

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L    I Y LGVDGIS+ F+IL++ L+  C L +W + E+  K+++I F ++E++++  F
Sbjct:  82 LGTG-ISYHLGVDGISMLFVILSTFLMPFCVLASWLSVEKRLKDYMIAFLVLETMMIGVF 140

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
            ++D++LFY+FFE  LIP+F IIG++G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++
Sbjct: 141 VSLDIVLFYVFFEAGLIPMFLIIGVWGGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQ 199

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH +APT+GS+ILAG
Sbjct: 200 AGTTDIPALLAYKFPPHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 259

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLKLGGYG +RFSL +FP AS Y++PL++ +S+IAIIY SL  L Q D+KK++AYSS+A
Sbjct: 260 ILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIKKLIAYSSVA 319

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+GYV +GIF+ N QG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 320 HMGYVTMGIFAANQQGVQGAIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGGLVNNM 379

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +AV +  FT+AN+GLPGTS FIGEF+ LIG+ + +    +F+ +G+ILSA+Y LW Y 
Sbjct: 380 PKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYR 439

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           R+IFG L++   K L D+S +E + L PL+ LT++ G+YP
Sbjct: 440 RVIFGALEKENLKKLLDLSPREQLILYPLIALTILFGVYP 479


ref|ZP_10535147.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium sp. AP16]
gb|EJK87720.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium sp. AP16]
(503 aa)

Score: 461 bits (1185), Expect: 4.36824e-127
Length: 460, Idn/Pos/Gap = 228/333/7 (49%/72%/1%)

Query:  18 PLLGCIIIIFI----PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL+G +I++F+    P  +  ++   SL+ +  TF++++++WI FD +   FQ +     
Sbjct:  14 PLVGVLILLFMRDDGPNGRRNILNV-SLLTTVFTFIVSLFIWIGFDNANPGFQMIEKHGW  72

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L    I Y LGVDGIS+ F+IL++ L+  C L +W + E+  K+++I F ++E++++  F
Sbjct:  73 LGTG-ISYHLGVDGISMLFVILSTFLMPFCVLASWLSVEKRLKDYMIAFLVLETMMIGVF 131

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
            ++D++LFY+FFE  LIP+F IIG++G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++
Sbjct: 132 VSLDIVLFYVFFEAGLIPMFLIIGVWGGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQ 190

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  L    F    Q  LWLAFFASFAVK+PM P H WLP+AH +APT+GS+ILAG
Sbjct: 191 AGTTDIPALLAYKFPPHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 250

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLKLGGYG +RFSL +FP AS Y++PL++ +S+IAIIY SL  L Q D+KK++AYSS+A
Sbjct: 251 ILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIKKLIAYSSVA 310

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+GYV +GIF+ N QG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 311 HMGYVTMGIFAANQQGVQGAIFQMLSHGIVSGALFLCVGVIYDRTHTREIAAYGGLVNNM 370

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +AV +  FT+AN+GLPGTS FIGEF+ LIG+ + +    +F+ +G+ILSA+Y LW Y 
Sbjct: 371 PKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYR 430

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           R+IFG L++   K L D+S +E + L PL+ LT++ G+YP
Sbjct: 431 RVIFGALEKENLKKLLDLSPREQLILYPLIALTILFGVYP 470


ref|YP_004899099.1| NADH-ubiquinone oxidoreductase subunit M [Pelagibacterium halotolerans B2]
gb|AEQ51349.1| NADH-ubiquinone oxidoreductase chain M [Pelagibacterium halotolerans B2]
(519 aa)

Score: 461 bits (1185), Expect: 4.51649e-127
Length: 487, Idn/Pos/Gap = 227/338/5 (46%/69%/1%)

Query:   7 HDSLLIWINNFPLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYF  63
            +++L  +   PL+G   I+  P    V    I+  +L  + +TF+ T+ +W +FD    
Sbjct:   4 ENNILTIVTFLPLVGAFFILLTPGGDAVAELNIKRIALATTVVTFVFTLVMWGMFDPDTA  63

Query:  64 YFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFF 123
            FQFV +   L  ++I Y +GVDGIS+ FI+LT LL+ +C L +W +     +E+++LF 
Sbjct:  64 DFQFVQNHTWLG-DVIGYRMGVDGISVLFIVLTGLLMPMCILASWESISFRIREYMVLFL 122

Query: 124 MIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLI 183
           ++E L++  F+T+DL +FY+FFEG L+P+F IIGI+G + R+I+ASY+FF YT +GS+L+
Sbjct: 123 VLEMLMIGVFATLDLAMFYVFFEGTLVPMFLIIGIWGGK-RRIQASYKFFFYTFIGSVLM 181

Query: 184 LIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEA 243
           L+AI+ +Y++ GT +I  L + DF E  Q  LWLAFFAS AVK+PM PFH WLPEAH EA
Sbjct: 182 LLAIMAMYWQAGTLDIARLLDYDFPENMQYWLWLAFFASLAVKMPMWPFHRWLPEAHVEA 241

Query: 244 PTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDL 303
           PT+GS+ILA ILLKLGGYGFLRFSLP+FP AS Y+S  ++ LS+ AII  SL  L Q D+
Sbjct: 242 PTAGSVILAAILLKLGGYGFLRFSLPMFPDASLYFSNFVFFLSVAAIIITSLVALVQTDI 301

Query: 304 KKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRIL 363
           KK++AYSS+AH+G+V +GIF+ NV G++G++  ++ HG VS ALFL VGV+YDR  TR +
Sbjct: 302 KKLIAYSSVAHMGFVTMGIFAGNVYGVQGAIFQMISHGIVSGALFLSVGVIYDRMHTRDI 361

Query: 364 KYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIIL 423
             Y GL   +P +A     FT+AN+GLPGTS F+GEF+ L+ + Q +    +F+T+G+IL
Sbjct: 362 NAYGGLVERMPRYAFAFMVFTMANVGLPGTSGFVGEFLTLLAIFQVNTWFAVFATTGVIL 421

Query: 424 SASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHIT 483
           SA Y LW Y ++I+G L++   K + D++ +E + ++PL+ILT++ G YP   + ++  +
Sbjct: 422 SACYALWLYRKIIWGALEKESLKSILDLNAREMVTIVPLIILTILFGFYPAPLMDAMSTS 481

Query: 484 ILRLLTH 490
           +  L+  
Sbjct: 482 VGALVDQ 488


ref|ZP_18304702.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WU95]
gb|EIW42165.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WU95]
(503 aa)

Score: 461 bits (1185), Expect: 4.86871e-127
Length: 434, Idn/Pos/Gap = 222/320/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++++WI FD +   FQ +     L    I Y +GVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFVVSLFIWIGFDNANPGFQMIEKHNWLGTG-IGYHVGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|ZP_05082775.1| NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062]
ref|YP_005081953.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pseudovibrio sp. FO-BEG1]
gb|EEA96400.1| NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062]
gb|AEV37931.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudovibrio sp. FO-BEG1]
(508 aa)

Score: 461 bits (1185), Expect: 4.86871e-127
Length: 477, Idn/Pos/Gap = 228/333/6 (47%/69%/1%)

Query:  18 PLLGCIIIIFI---PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G + I+ +     +    IR  +LI ++ TF++++++W  F      FQ V  K   
Sbjct:  14 PLVGVLFILLVRGDDPDAKTNIRRVALITTTFTFIVSLFIWGGFTNENPGFQMV-EKYDW  72

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
             +   Y +GVDGIS+ F+ILT+ L+ +C L +W + ++  KE++I F ++E+L++  F 
Sbjct:  73 FGDTFTYHMGVDGISMLFVILTTFLMPLCILASWESVQDRVKEYMIAFLVLETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFY+FFE  LIP+F IIG++G   R++ ASY+FFLYTLLGS+L+L AI+ +Y++ 
Sbjct: 133 ALDLVLFYVFFEAGLIPMFLIIGVWGG-PRRVYASYKFFLYTLLGSVLMLAAIMAMYWQA 191

Query: 195 GTTNI-NFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
           GT +I   L   DF  + Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS++LA 
Sbjct: 192 GTLDIVELLDKSDFPAQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVVLAA 251

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLK+GGYGFLRFSLP+FP AS  ++PLI+TLSI+AIIY SL  L Q D+KK++AYSS+A
Sbjct: 252 ILLKMGGYGFLRFSLPMFPIASDMFAPLIFTLSIVAIIYTSLVALAQEDIKKLIAYSSVA 311

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+G+V +GIFS N QG+EG++ ++L HG +S ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 312 HMGFVTMGIFSANAQGIEGAIFMMLAHGLISGALFLCVGVIYDRMHTRQITAYGGLVNNM 371

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +AV    FT+AN+GLPGT+ F+GEF+ +IG+ Q +     F+ +G+ILSA+Y L+ Y 
Sbjct: 372 PRYAVAFMIFTMANVGLPGTAGFVGEFLTMIGVFQVNTWVAFFAATGVILSAAYALFLYR 431

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           R++FG L++   K + D++ +E + L PL+ILT+  G YP   L     ++  L+ +
Sbjct: 432 RVVFGALEKESLKSMLDLTGREKLILAPLIILTIFFGFYPAALLDVTSASVGALIEN 488


ref|YP_005418302.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Rhodospirillum photometricum DSM 122]
emb|CCG09332.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Rhodospirillum photometricum DSM 122]
(496 aa)

Score: 461 bits (1185), Expect: 5.20479e-127
Length: 480, Idn/Pos/Gap = 227/334/4 (47%/69%/0%)

Query:  14 INNFPLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVIS  70
           I   PL+G + I+ I  ++ V+    R  +L+ +  TFL+++ LWI FD++   FQFV  
Sbjct:  10 ITFLPLVGAVFIVTIRGDEAVVARNTRHVALLTTVFTFLLSLKLWIGFDQTQQGFQFVER  69

Query:  71 KKILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLL 130
              L    I Y +GVDGIS+ F++L++ L  +C L +W + +++ KE++I F ++E++++
Sbjct:  70 DVWLPSYNIAYHMGVDGISVLFVLLSTFLSVICVLASWESIQKHIKEYMIAFLVLETMMV 129

Query: 131 NAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLI 190
             F  +D +LFYIFFEGVLIP+F IIGI+G   R++ A+++FFLYTLLGS+L+L+A+L +
Sbjct: 130 GMFCALDFVLFYIFFEGVLIPMFLIIGIWGG-VRRVYAAFKFFLYTLLGSVLMLLAMLTM 188

Query: 191 YFETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSII 250
           YF+ GTT+I  L    F    Q  LWLA FASFAVKVPM P H WLP+AH EAPT+GS+I
Sbjct: 189 YFQAGTTDIPSLMTHAFPAGLQTWLWLAMFASFAVKVPMWPVHTWLPDAHVEAPTAGSVI 248

Query: 251 LAGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYS 310
           LAG+LLK+G YGFLRFS+P+ P AS  + PL+Y LSI+A+IY SL  L Q D+KK++AYS
Sbjct: 249 LAGVLLKMGAYGFLRFSIPMLPLASADFQPLVYLLSIVAVIYTSLVALAQEDMKKLIAYS 308

Query: 311 SIAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLT 370
           SIAH+G+V  GIF+   Q +EG+L  +L HG VS ALFLCVGV+YDR  TR +  Y GL 
Sbjct: 309 SIAHMGFVTAGIFAMTPQAVEGALFQMLSHGVVSGALFLCVGVVYDRLHTREINRYGGLA 368

Query: 371 TFIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLW 430
           + +P +A++   F +A++GLPGTS F+GEF+I++G+ + S +     ++G++L A+Y L+
Sbjct: 369 STMPRYALVFMLFMMASVGLPGTSGFVGEFMIMLGVFRDSTLVAALISTGLVLGAAYMLY 428

Query: 431 FYNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
            Y R++FG L++   + L D+S +E     PLV L L MG+ P+ FL  +H ++  L+ +
Sbjct: 429 LYRRVLFGKLEKEDLRGLLDLSPREVAVFAPLVALVLWMGIVPSAFLDFMHGSVADLIAN 488


ref|YP_221556.1| NADH dehydrogenase subunit M [Brucella abortus bv. 1 str. 9-941]
ref|YP_414265.1| NADH dehydrogenase subunit M [Brucella melitensis biovar Abortus 2308]
ref|YP_001934776.1| NADH dehydrogenase subunit M [Brucella abortus S19]
ref|ZP_04594248.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus str. 2308 A]
ref|ZP_05821228.1| NADH-ubiquinone oxidoreductase [Brucella abortus NCTC 8038]
ref|ZP_05866916.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
ref|ZP_05870137.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
ref|ZP_05873957.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
ref|ZP_05895209.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
ref|ZP_06931886.1| NADH dehydrogenase I subunit M [Brucella abortus bv. 5 str. B3196]
ref|YP_005152036.1| NADH dehydrogenase I subunit M [Brucella abortus A13334]
ref|ZP_17153764.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI435a]
ref|ZP_17157238.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI474]
ref|ZP_17160027.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI486]
ref|ZP_17164004.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI488]
ref|ZP_17166635.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI010]
ref|ZP_17169763.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI016]
ref|ZP_17172546.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI021]
ref|ZP_17175682.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI259]
gb|AAX74195.1| NuoM, NADH dehydrogenase I, M subunit [Brucella abortus bv. 1 str. 9-941]
emb|CAJ10790.1| NADH/Ubiquinone/plastoquinone (complex I):NADH-ubiquinone oxidoreductase, chain 4 [Brucella melitensis biovar Abortus 2308]
gb|ACD72302.1| NADH-ubiquinone oxidoreductase, chain 4 [Brucella abortus S19]
gb|EEP64297.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus str. 2308 A]
gb|EEW80769.1| NADH-ubiquinone oxidoreductase [Brucella abortus NCTC 8038]
gb|EEX55047.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
gb|EEX58867.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
gb|EEX61497.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
gb|EEX80192.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
gb|EFH34684.1| NADH dehydrogenase I subunit M [Brucella abortus bv. 5 str. B3196]
gb|AEW18034.1| NADH dehydrogenase I subunit M [Brucella abortus A13334]
gb|EHR12111.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI474]
gb|EHR13439.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI435a]
gb|EHR14172.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI486]
gb|EHR21281.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI010]
gb|EHR21797.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI016]
gb|EHR22078.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI488]
gb|EHR30123.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI259]
gb|EHR30708.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus bv. 1 str. NI021]
(502 aa)

Score: 461 bits (1185), Expect: 5.29237e-127
Length: 476, Idn/Pos/Gap = 232/329/5 (48%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           I YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 IAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|YP_006591840.1| proton-translocating NADH-quinone oxidoreductase subunit M (NADH dehydrogenase I subunit M) [Methylocystis sp. SC2]
emb|CCJ07189.1| Proton-translocating NADH-quinone oxidoreductase subunit M (NADH dehydrogenase I subunit M) [Methylocystis sp. SC2]
(502 aa)

Score: 461 bits (1185), Expect: 5.51784e-127
Length: 456, Idn/Pos/Gap = 226/325/3 (49%/71%/0%)

Query:  36 IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIIL  95
           IR+ +L  +  TF +++ +W  FD +   FQFV  K  L   L+ Y +GVDG S+ F++L
Sbjct:  35 IRWATLATTLATFALSLVIWSGFDTTSAAFQFVEEKNWLGSGLV-YKMGVDGFSMPFVLL  93

Query:  96 TSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTI 155
           T+ L+    L +W++ ++  KE++I F ++E+L++  F  +DL+LFY+FFEG LIP+F I
Sbjct:  94 TTFLMPFAILASWDSIQKRVKEYMIAFLVLETLMIGVFCALDLVLFYLFFEGGLIPMFLI 153

Query: 156 IGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLL 215
           IGI+G + R++ AS++FFLYTL+GSLL+L+AIL +Y + GTT+I  L N DF +  Q  L
Sbjct: 154 IGIWGGK-RRVYASFKFFLYTLVGSLLMLVAILAMYGKAGTTDITVLLNTDFPKEMQTWL 212

Query: 216 WLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYAS 275
           WLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILA ILLK+GGYGF+RFSLP+FP AS
Sbjct: 213 WLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFIRFSLPMFPDAS 272

Query: 276 FYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLL 335
             ++PLIY LS+IAI+Y SL  L Q D+KK++AYSS+AH+G+V +G+F+ N QG++G++ 
Sbjct: 273 TNFAPLIYALSVIAIVYTSLVALVQEDIKKLIAYSSVAHMGFVTMGLFTLNAQGMQGAIF 332

Query: 336 LILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSN 395
            ++ HG VS ALFLCVGV+YDR  TR +  Y GL   +P++A +   FT+AN+GLPGT+ 
Sbjct: 333 QMISHGLVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPIYAFVFMLFTMANVGLPGTTG 392

Query: 396 FIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKE 455
           FIGEF+ L G  Q +    + +TSG++LSA+Y L+ Y R+IFG L +   K + D++ +E
Sbjct: 393 FIGEFLSLTGAFQANSWVALIATSGVVLSAAYALYLYRRVIFGVLDKASLKNIADLTPRE 452

Query: 456 FMALIPLVILTLIMGLYPNIFLHSIHITILRLL-TH 490
                PLV+LTL  G+ P   L +   ++  L+ TH
Sbjct: 453 IAIFTPLVLLTLYYGVQPGPILSATQASVDNLIQTH 488


ref|ZP_18298453.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. viciae WSM1455]
gb|EJC70539.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. viciae WSM1455]
(503 aa)

Score: 460 bits (1184), Expect: 5.84971e-127
Length: 434, Idn/Pos/Gap = 224/318/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TFL+++ +WI FD +   FQ V     L    I Y +GVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFLVSLAIWIGFDNANPGFQMVEKHNWLGTG-IGYHVGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKERLKALLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


gb|ABC67283.1| NADH dehydrogenase subunit 4 [Haplomitrium mnioides]
(437 aa)

Score: 460 bits (1184), Expect: 6.15001e-127
Length: 433, Idn/Pos/Gap = 219/309/0 (50%/71%/0%)

Query:  44 SSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLLIFVC 103
           S +T     +  I F+      QFV + + L +  I +++G+DGI LFF+ILT+ L  + 
Sbjct:   2 SPMTLPYPPFSRIRFENDTAKSQFVETIRWLPYSNINFYIGIDGIPLFFVILTTSLTPIR  61

Query: 104 FLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRT 163
            L+  ++ + Y KE++  F + ESLL+  F + D  +FY+F E VLIP+F IIG++GSR 
Sbjct:  62 ILVGLHSVKNYKKEYMTAFPIRESLLIAVFRSPDPSIFYVFLESVLIPMFIIIGVWGSRQ 121

Query: 164 RKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAFFASF 223
            KI+A+YQFFLYTL+GSL +L+AIL I+F TGTT++  L   +F ER+Q+LLW+AFFASF
Sbjct: 122 GKIKAAYQFFLYTLMGSLFMLLAILFIFFRTGTTDLQILLTTEFSERRQILLWIAFFASF 181

Query: 224 AVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYSPLIY 283
           +VKVPM+P HI LPEAHAEAPT+GS+ILAGIL K G +GFLRFS+P  P A+ + +P IY
Sbjct: 182 SVKVPMVPVHIRLPEAHAEAPTAGSVILAGILPKSGTHGFLRFSIPTSPEATLHSTPFIY 241

Query: 284 TLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILGHGFV 343
           T S+IA IY SLTT+RQ+DLKKI+A+S +AH  +  +G+FS N+QG+EGS+   L HG V
Sbjct: 242 TPSVIATIYTSLTTIRQIDLKKIIAHSPVAHTNFATIGMFSLNIQGIEGSISPTLSHGPV 301

Query: 344 SSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGEFIIL 403
           SSAL LCVG  YDR+KTRI+KYY GL + +P+ +++  F TLAN+ LPGTS+ IGEF IL
Sbjct: 302 SSALLLCVGAPYDRHKTRIVKYYGGLVSTMPIPSIIFLFLTLANMSLPGTSSSIGEFPIL 361

Query: 404 IGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMALIPLV 463
           +G  Q + +    +  G+IL A+Y LW YNR++FGN K ++     D++++E    +P +
Sbjct: 362 VGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNSKPDFIPEFSDLNRREVPTFLPFI 421

Query: 464 ILTLIMGLYPNIF 476
           +  + MG+YP +F
Sbjct: 422 VGVIRMGVYPEVF 434


ref|ZP_11418660.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia felis ATCC 53690]
gb|EKS28033.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia felis ATCC 53690]
(502 aa)

Score: 460 bits (1184), Expect: 6.51991e-127
Length: 477, Idn/Pos/Gap = 227/328/6 (47%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVLI----RFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL+G  ++  + R          R+ +L  + +TF +++ L + FD S   FQF      
Sbjct:  14 PLVGAALLYLLARGNEASAARNARWIALWTTIVTFAVSLVLLVHFDSSQSGFQFEERAHW  73

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L    I Y +GVDGISL F+ILT+ L+  C L +W + +   +E+++ F ++E+L++  F
Sbjct:  74 LG-AAINYHMGVDGISLPFVILTTALMPFCILASWKSIQVRVREYMMAFLVLETLMVGTF 132

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
           S++DL+LFY+FFEG LIP+F IIG++G   R++ AS++FFLYTLLGS+L+L+AI+ +Y +
Sbjct: 133 SSLDLVLFYLFFEGGLIPMFLIIGVWGG-PRRVYASFKFFLYTLLGSVLMLLAIMALYAQ 191

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  L   +     Q   WLAFFASFAVK+PM P H WLP+AH EAPT+GS++LA 
Sbjct: 192 AGTTDIPTLMTTNLPHELQRWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVVLAA 251

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           ILLK+GGYGFLRFSLP+FP AS  ++PL++TLS IAIIY SL  L Q D+KK++AYSS+A
Sbjct: 252 ILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDMKKLIAYSSVA 311

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+G+V +GIF+ NVQG+ G +  ++ HG VS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 312 HMGFVTMGIFAGNVQGVAGGVFQMISHGIVSGALFLCVGVIYDRMHTREIAAYGGLVNRM 371

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           PL+A     FT+AN+GLPGTS F+GEF+ LIG  + S+   IF+T+G+ILSA Y LW Y 
Sbjct: 372 PLYAFTFLLFTMANVGLPGTSGFVGEFLTLIGTFKASIPTAIFATTGVILSAGYALWLYR 431

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +++FG L +     ++D++ +E M  +P ++LT++ G+YP   L     +I  L+ +
Sbjct: 432 KIVFGELTKPSLASIKDMTGREVMIFVPFIVLTILFGVYPKPVLDMSAASIQHLVEN 488


ref|ZP_11264070.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium mesoamericanum STM3625]
emb|CCM75224.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Rhizobium mesoamericanum STM3625]
(503 aa)

Score: 460 bits (1184), Expect: 6.51991e-127
Length: 434, Idn/Pos/Gap = 226/320/2 (52%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI + +TF++++++WI FD +   FQ +     L    I Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLITTIVTFVLSLFVWIGFDNANPGFQMIEKHNWLGTG-ISYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  K+++I F ++E +++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKDYMIAFLILEVMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F  + Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDIPALLAYKFPPQMQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS +++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPIASEFFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ LS+IAIIY SL  L Q D+KK++AYSS+AH+GYV +GIF+ NVQGL+GS+  +L 
Sbjct: 277 PLVFALSVIAIIYTSLVALMQDDMKKLIAYSSVAHMGYVTMGIFAANVQGLQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PL+ LT+  G+YP
Sbjct: 457 YPLIALTIFFGVYP 470


ref|ZP_08528426.1| NADH dehydrogenase subunit M [Agrobacterium sp. ATCC 31749]
gb|EGL64868.1| NADH dehydrogenase subunit M [Agrobacterium sp. ATCC 31749]
(503 aa)

Score: 460 bits (1183), Expect: 8.03217e-127
Length: 434, Idn/Pos/Gap = 220/317/2 (50%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TF++++++WI FD S   FQ V  K      +  Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLLTTVFTFIVSLFVWIGFDNSNPGFQMV-EKHAWFGNIAAYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +WN+ E+  KE++I F ++E +++  F  +D +LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWNSIEKRVKEYMIAFLLLEVVMVGVFVALDTVLFYVFFEATLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L ++AI+ +Y+++GTT++  L    F    Q  LWLA 
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLTMLAIMAMYWQSGTTDMTELLKYGFPAGMQTWLWLAC 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FA+F+VK+PM P H WLP+AH +APT+GS+ILAG++LKLGGYGF+RFSL +FP AS Y++
Sbjct: 217 FAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLS++AIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ NVQG++G+L  +L 
Sbjct: 277 PFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGALFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + + +  +F+ +G+ILSA+Y LW Y R+IFG L++   K + D+S +E + L
Sbjct: 397 FLTLIGVFRANTLVALFAATGVILSAAYALWLYRRVIFGALEKESLKSMLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|ZP_16032493.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. Pop5]
gb|EJZ23239.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. Pop5]
(503 aa)

Score: 460 bits (1183), Expect: 8.09947e-127
Length: 434, Idn/Pos/Gap = 223/319/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++++W  FD +   FQ +     L    I Y +GVDGIS+ FIIL++ L
Sbjct:  39 SLITTVFTFVVSLFIWTGFDNANPGFQMLEKHDWLGTG-IGYHVGVDGISMLFIILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ NVQG++GS+  +L 
Sbjct: 277 PLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT++ G+YP
Sbjct: 457 YPLVALTILFGVYP 470


ref|YP_002549244.1| NADH dehydrogenase subunit M [Agrobacterium vitis S4]
gb|ACM36238.1| NADH dehydrogenase I chain M [Agrobacterium vitis S4]
(512 aa)

Score: 460 bits (1183), Expect: 8.37435e-127
Length: 460, Idn/Pos/Gap = 226/330/7 (49%/71%/1%)

Query:  18 PLLGCIIIIFI----PRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL+G  +++ +    P  +  ++   SL+ +  TF++++++WI FD +   FQ V +   
Sbjct:  23 PLVGVALLLLMNGDTPSGRRNVLNI-SLLTTVATFIVSLFIWIGFDNANPGFQMVENHPW  81

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           L    I Y LGVDGIS+ F++LT+ L+  C L +W + ++  KE++I F ++E +++  F
Sbjct:  82 LGTG-IAYHLGVDGISMLFVVLTAFLMPFCVLASWTSVQKRIKEYMIAFLILEVMMIGVF 140

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
            ++D++LFY+FFE  LIP+F IIG++G + R + ASY+FFLYTLLGS+L+++AI+ +Y++
Sbjct: 141 VSLDIVLFYVFFEAGLIPMFIIIGVWGGKDR-VYASYKFFLYTLLGSVLMMLAIMAMYWD 199

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  L    F    Q +LWLAFFASFAVK+PM P H WLP+AH +APT+GS+ILAG
Sbjct: 200 AGTTDIAALLAHKFPPHLQTVLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAG 259

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           I+LKLGGYGF+RFSL +FP AS Y++P ++ LS+IAIIY SL  L Q D+KK++AYSSIA
Sbjct: 260 IMLKLGGYGFIRFSLAMFPLASDYFAPAVFALSVIAIIYTSLVALMQEDMKKLIAYSSIA 319

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+GYV +GIF+ N QGL+G++  ++ HGFVS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 320 HMGYVTMGIFAANTQGLQGAVFQMISHGFVSGALFLCVGVIYDRMHTREIVAYGGLANNM 379

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +A+    FT+AN+GLPGTS FIGEF+ LIG  + +    +F+ +G+ILSA+Y LW Y 
Sbjct: 380 PKYALAFMIFTMANVGLPGTSGFIGEFLTLIGAFRANSWVALFAATGVILSAAYALWLYR 439

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           R++FG L +   K L D+S +E + L PL+ LT++ G+YP
Sbjct: 440 RVVFGALDKESLKALLDLSFREKVTLYPLIALTILFGVYP 479


ref|ZP_10467421.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella birtlesii LL-WM9]
gb|EJF77006.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella birtlesii LL-WM9]
(498 aa)

Score: 460 bits (1183), Expect: 8.95241e-127
Length: 477, Idn/Pos/Gap = 232/335/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI  +  V    IR  +   +   F+I++ +W  FD     FQ V     L
Sbjct:  23 PLVGVLLILFIKDDSEVARHNIRNVAFFTTVFVFIISLIIWAGFDNKNPSFQMVERFNWL  82

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +G+DGIS+ F++L++ L+  C L +W   ++  K ++I F ++E  ++  F 
Sbjct:  83 G-NGIHYHMGIDGISVLFVVLSAFLLPFCILASWENIKDKLKAYMIAFLLLEVAVIGVFC 141

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+A++ IY+E 
Sbjct: 142 ALDAMLFYVFFEGSLIPMFIIIGVWGGE-RRVYASIKFFLYTLLGSVLMLVALMAIYWEA 200

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L N  F  + Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 201 GTLDIPTLLNYSFPAQMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 260

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PLI+TLS+IAIIY SL  L Q D+KK++AYSSIAH
Sbjct: 261 LLKLGGYGFLRFSLPMFPLASADFAPLIFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAH 320

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N QG++G++  +L HG +S+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 321 MGYVTMGIFAANEQGIQGAIYQMLSHGIISAALFLCVGVIYDRLHTREISAFGGLVNNMP 380

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ Q + +  IF+T+G+ILSA+Y L+ Y R
Sbjct: 381 KYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGVILSAAYALYLYQR 440

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E + L P+VILT+  G+YP   L +   ++  L+  +
Sbjct: 441 VVFGSLDKENLKVLIDLSSREKLILYPMVILTIFFGVYPTPVLKATAFSVEALINKL 497


ref|ZP_18314435.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2012]
gb|EJC73099.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2012]
(503 aa)

Score: 460 bits (1183), Expect: 9.17933e-127
Length: 434, Idn/Pos/Gap = 224/317/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++ +W  FD +   FQ V     L    I Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLITTVFTFVVSLLIWTGFDNANPGFQMVEKHDWLGTG-IGYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F  +D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVALDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ L+G+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLMGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|ZP_18318151.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2297]
gb|EJC78843.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2297]
(503 aa)

Score: 459 bits (1182), Expect: 9.65057e-127
Length: 434, Idn/Pos/Gap = 225/318/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++ +W  FD +   FQ V     L    I Y LGVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFVVSLLIWTGFDNANPGFQMVEKHDWLGTG-IGYHLGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVIYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALFDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|NP_354292.1| NADH dehydrogenase I chain M [Agrobacterium fabrum str. C58]
gb|AAK87077.1| NADH dehydrogenase I chain M [Agrobacterium fabrum str. C58]
(503 aa)

Score: 459 bits (1182), Expect: 9.89518e-127
Length: 434, Idn/Pos/Gap = 219/318/2 (50%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TF++++++WI FD S   FQ V  K     ++  Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLLTTVFTFIVSLFVWIGFDNSNPGFQMV-EKHAWFGKIAAYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +WN+ E+  KE++I F ++E +++  F  +D +LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWNSIEKRVKEYMIAFLLLEVVMVGVFVALDTVLFYVFFEATLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L ++AI+ +Y+++GTT++  L    F    Q  LWLA 
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLTMLAIMAMYWQSGTTDMTELLKYGFPAGMQTWLWLAC 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FA+F+VK+PM P H WLP+AH +APT+GS+ILAG++LKLGGYGF+RFSL +FP AS Y++
Sbjct: 217 FAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLS++AIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ NVQG++G++  +L 
Sbjct: 277 PFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + + +  +F+ +G+ILSA+Y LW Y R+IFG L++   K + D+S +E + L
Sbjct: 397 FLTLIGVFRANTLVALFAATGVILSAAYALWLYRRVIFGALEKESLKSMLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|ZP_12980118.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens 5A]
gb|EHJ99615.1| NADH:ubiquinone oxidoreductase subunit M [Agrobacterium tumefaciens 5A]
(503 aa)

Score: 459 bits (1182), Expect: 9.97809e-127
Length: 459, Idn/Pos/Gap = 224/326/5 (48%/71%/1%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFF---SLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++++    N     R     SL+ +  TFL+++++WI FD S   FQ V  K   
Sbjct:  14 PLIGVVLLLLTNENGPYGRRNILNVSLLTTVFTFLVSLFVWIGFDNSNPGFQMV-EKHAW  72

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
              +  Y LGVDGIS+ F+ILT+ L+  C L +W + E+  KE++I F ++E +++  F 
Sbjct:  73 FGNIAAYHLGVDGISMLFVILTTFLMPFCVLASWQSVEKRIKEYMIAFLLLEVVMIGVFV 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFE  LIP+F IIG++G + R + ASY+FFLYTLLGS+L ++AI+ +Y+++
Sbjct: 133 ALDTVLFYVFFEATLIPMFIIIGVWGGKDR-VYASYKFFLYTLLGSVLTMLAIMAMYWQS 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT++  L    F    Q  LWLA FA+F+VK+PM P H WLP+AH +APT+GS+ILAG+
Sbjct: 192 GTTDMTELLKYGFPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           +LKLGGYGF+RFSL +FP AS Y++P ++TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 MLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ NVQG++G++  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGYVTMGIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS F+GEF+ LIG+ + + +  +F+ +G+ILSA+Y LW Y R
Sbjct: 372 KYAVAFMIFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILSAAYALWLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473
           +IFG L++   K + D+S +E + L PLV LT+  G+YP
Sbjct: 432 VIFGALEKESLKSMLDLSTREKVILYPLVALTIFFGVYP 470


ref|NP_540063.1| NADH dehydrogenase subunit M [Brucella melitensis bv. 1 str. 16M]
ref|NP_697828.1| NADH dehydrogenase subunit M [Brucella suis 1330]
ref|YP_001627491.1| NADH dehydrogenase subunit M [Brucella suis ATCC 23445]
ref|YP_002732563.1| NADH dehydrogenase subunit M [Brucella melitensis ATCC 23457]
ref|ZP_05466703.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9]
ref|YP_003106754.1| NADH dehydrogenase subunit M [Brucella microti CCM 4915]
ref|ZP_05834333.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M]
ref|ZP_05933107.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
ref|ZP_05953630.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
ref|ZP_05956665.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
ref|ZP_05960872.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
ref|ZP_05964123.1| proton-translocating NADH-quinone oxidoreductase [Brucella neotomae 5K33]
ref|ZP_05995844.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
ref|ZP_06101061.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
ref|ZP_06103474.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
ref|ZP_06792844.1| NADH dehydrogenase I subunit M [Brucella sp. NVSL 07-0026]
ref|ZP_07476350.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella inopinata BO1]
ref|YP_004755910.1| NADH dehydrogenase subunit M [Brucella pinnipedialis B2/94]
ref|YP_005154500.1| NADH dehydrogenase subunit M [Brucella suis VBI22]
ref|YP_005600272.1| proton-translocating NADH-quinone oxidoreductase subunit M [Brucella melitensis M5-90]
ref|YP_005615652.1| NADH dehydrogenase subunit M [Brucella suis 1330]
ref|YP_005596911.1| NADH dehydrogenase subunit M [Brucella melitensis M28]
ref|YP_005603614.1| NADH dehydrogenase subunit M [Brucella melitensis NI]
gb|AAL52327.1| NADH-quinone oxidoreductase chain m [Brucella melitensis bv. 1 str. 16M]
gb|AAN29743.1| NADH dehydrogenase I, M subunit [Brucella suis 1330]
gb|ABY37921.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella suis ATCC 23445]
gb|ACO00609.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella melitensis ATCC 23457]
gb|ACU47805.1| NADH dehydrogenase subunit M [Brucella microti CCM 4915]
gb|EEW88955.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M]
gb|EEX90483.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
gb|EEX97861.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
gb|EEY00188.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
gb|EEY04403.1| proton-translocating NADH-quinone oxidoreductase [Brucella neotomae 5K33]
gb|EEY06956.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
gb|EEY29814.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
gb|EEZ14276.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
gb|EEZ18234.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9]
gb|EEZ30962.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
gb|EFG37759.1| NADH dehydrogenase I subunit M [Brucella sp. NVSL 07-0026]
gb|EFM57655.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella inopinata BO1]
gb|ADZ65902.1| NADH dehydrogenase subunit M [Brucella melitensis M28]
gb|ADZ86768.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella melitensis M5-90]
gb|AEK54142.1| NADH dehydrogenase, subunit M [Brucella pinnipedialis B2/94]
gb|AEM18160.1| NADH dehydrogenase subunit M [Brucella suis 1330]
gb|AEQ08432.1| NADH dehydrogenase subunit M [Brucella melitensis NI]
gb|AEU05828.1| NADH dehydrogenase subunit M [Brucella suis VBI22]
(502 aa)

Score: 459 bits (1182), Expect: 1.00617e-126
Length: 476, Idn/Pos/Gap = 231/329/5 (48%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|ZP_03785348.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella ceti str. Cudo]
ref|ZP_06001731.1| NADH-ubiquinone oxidoreductase [Brucella sp. F5/99]
gb|EEH14361.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella ceti str. Cudo]
gb|EEY26002.1| NADH-ubiquinone oxidoreductase [Brucella sp. F5/99]
(502 aa)

Score: 459 bits (1182), Expect: 1.0146e-126
Length: 476, Idn/Pos/Gap = 231/329/5 (48%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|ZP_07657482.1| NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4]
gb|EFO33627.1| NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4]
(506 aa)

Score: 459 bits (1182), Expect: 1.05782e-126
Length: 476, Idn/Pos/Gap = 236/332/5 (49%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQ---LVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PLLG + ++ +P N       +R  +L+ +  TF  ++ +W  FD +   FQFV S++ L
Sbjct:  14 PLLGVVFLMIVPGNDDGAKGAMRMVALVTTLFTFATSLAIWYFFDYTNPGFQFVESREWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F+ILT+ L+  C L +W + ++  +E++I F ++E+L++  F 
Sbjct:  74 GGN-INYKMGVDGISVLFVILTTFLMPFCILASWESVQKRVREYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFYIFFE  LIP+F IIG++G   R++ ASY+FFLYTLLGS+L+LIAI+ +Y+E 
Sbjct: 133 ALDLVLFYIFFEAGLIPMFLIIGVWGG-ARRVYASYKFFLYTLLGSVLMLIAIMAMYWEV 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GTT+I  L +  F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTTDIPALMDHSFPGGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PL++TLS+IAI+Y SL  L Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASDMFAPLVFTLSVIAIVYTSLVALAQEDIKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+   QG++G +  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +P
Sbjct: 312 MGYVTMGIFTMTPQGIQGGVFQMLSHGIVSGALFLCVGVIYDRMHTREISAYGGLVNRMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS F+GE + L+G  Q +    + +TSG+ILSA+Y L+ Y R
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFVGEILTLMGAFQVNTWVAVIATSGVILSAAYALYLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           ++FG L +   K + D+  +E   L+PL+ILT+  G+YP   L     ++  L+ H
Sbjct: 432 VVFGELNKESLKSILDLDFREKAILLPLIILTIFFGVYPMAILDVTQGSVDNLINH 487


ref|ZP_05936285.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti B1/94]
ref|ZP_06110525.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
gb|EEX87241.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti B1/94]
gb|EEZ08426.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
(502 aa)

Score: 459 bits (1182), Expect: 1.08464e-126
Length: 476, Idn/Pos/Gap = 231/329/5 (48%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAVFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|ZP_06096645.1| proton-translocating NADH-quinone oxidoreductase [Brucella sp. 83/13]
ref|ZP_07471081.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. NF 2653]
gb|EEZ32763.1| proton-translocating NADH-quinone oxidoreductase [Brucella sp. 83/13]
gb|EFM62900.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. NF 2653]
(502 aa)

Score: 459 bits (1182), Expect: 1.15951e-126
Length: 476, Idn/Pos/Gap = 231/329/5 (48%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIRH 487


ref|YP_002975196.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii WSM1325]
gb|ACS55657.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM1325]
(503 aa)

Score: 459 bits (1181), Expect: 1.24993e-126
Length: 434, Idn/Pos/Gap = 223/319/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++++WI FD +   FQ +     L    I Y LGVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFVVSLFIWIGFDNANPGFQMLEKHDWLGTG-IGYHLGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ LS++AIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFALSVMAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|YP_007333339.1| NADH-quinone oxidoreductase subunit m [Rhizobium tropici CIAT 899]
gb|AGB70793.1| NADH-quinone oxidoreductase subunit m [Rhizobium tropici CIAT 899]
(503 aa)

Score: 459 bits (1181), Expect: 1.39314e-126
Length: 434, Idn/Pos/Gap = 222/322/2 (51%/74%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL  + +TF++++++WI FD +   FQ V   + L    I Y +GVDGIS+ F+IL++ L
Sbjct:  39 SLATTIVTFIVSLFVWIWFDNANPGFQLVEKHEWLTGG-ISYHMGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  K+++I F ++E++++  F+++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSVEKRLKDYMIAFLVLETMMVGVFTSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F  + Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDIPTLLAYKFPPQLQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAGILLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGLIRFSLGMFPNASEYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ LS+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N QG++G++  +L 
Sbjct: 277 PLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANQQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVIYDRTHTREIAAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRANTWVALFAATGVILSAAYALWLYRRVIFGALEKENLKKLLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PL+ LT++ G+YP
Sbjct: 457 YPLIALTILFGVYP 470


ref|ZP_12505321.1| NADH dehydrogenase subunit M [Agrobacterium tumefaciens F2]
gb|EGP57297.1| NADH dehydrogenase subunit M [Agrobacterium tumefaciens F2]
(503 aa)

Score: 459 bits (1181), Expect: 1.41658e-126
Length: 434, Idn/Pos/Gap = 219/317/2 (50%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TFL+++++WI FD S   FQ V  K      +  Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLLTTVFTFLVSLFIWIGFDNSNPGFQMV-EKHAWFGNIAAYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W++ E+  KE++I F ++E +++  F  +D +LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWDSIEKRVKEYMIAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L ++AI+ +Y++ GTT++  L    F    Q  LWLA 
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLTMLAIMAMYWQAGTTDMTELLKYGFPAGMQTWLWLAC 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FA+F+VK+PM P H WLP+AH +APT+GS+ILAG++LKLGGYGF+RFSL +FP AS Y++
Sbjct: 217 FAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLS++AIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ NVQG++G++  +L 
Sbjct: 277 PFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + + +  +F+ +G+ILSA+Y LW Y R+IFG L++   K + D+S +E + L
Sbjct: 397 FLTLIGVFRANTLVALFAATGVILSAAYALWLYRRVIFGALEKESLKAMLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV+LT+  G+YP
Sbjct: 457 YPLVVLTIFFGVYP 470


ref|YP_767317.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. viciae 3841]
emb|CAK07208.1| putative NADH-ubiquinone oxidoreductase subunit M [Rhizobium leguminosarum bv. viciae 3841]
(503 aa)

Score: 459 bits (1181), Expect: 1.52705e-126
Length: 434, Idn/Pos/Gap = 223/318/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++ +WI FD +   FQ V     L    I Y +GVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFVVSLVIWIGFDNANPGFQMVEKHNWLGTG-IGYHVGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ +S+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|NP_957726.1| NADH dehydrogenase subunit 4 [Emiliania huxleyi]
gb|AAP94708.1| NADH dehydrogenase subunit 4 [Emiliania huxleyi]
gb|AEI29460.1| NADH dehydrogenase subunit 4 (mitochondrion) [Emiliania huxleyi]
(478 aa)

Score: 459 bits (1180), Expect: 1.67384e-126
Length: 440, Idn/Pos/Gap = 234/319/1 (53%/72%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           P+ G +I++FI R+  VLIR FSL+ S + F  +IYL++ FD +   FQ     + LN  
Sbjct:   9 PIFGAVIVLFIKRSNFVLIRNFSLLWSLILFNSSIYLYLTFDPTTTKFQCTNKIEWLNVA  68

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWN-ANEEYNKEFLILFFMIESLLLNAFSTI 136
              +  G+DG++L  I+LT+ LI +C +L+W   N    KE++I+F  +ES+L   FS++
Sbjct:  69 NNHFVFGIDGLALLMILLTAFLIPICIMLSWKLKNPLLTKEYVIIFLSLESILNGVFSSL 128

Query: 137 DLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGT 196
           DLL+FYI FE VLIP++ +IG+FGSR RKI+ASY  FLYTL  S+++ IAIL +Y + GT
Sbjct: 129 DLLVFYILFEAVLIPMYFLIGVFGSRERKIKASYLLFLYTLFSSIIMFIAILFLYSKFGT 188

Query: 197 TNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILL 256
           TN   L   D     + L WLAFF SFAVK+PMIPFH+WLPEAH EAPT+GSI+LAGILL
Sbjct: 189 TNYLILAMFDLDPFTEKLCWLAFFFSFAVKMPMIPFHVWLPEAHCEAPTAGSILLAGILL 248

Query: 257 KLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIG 316
           KLGGYGFLRFSL LFP AS +++P ++ LS++ +IYAS++TL+QVDLKKI+AYSS++H+G
Sbjct: 249 KLGGYGFLRFSLVLFPNASAFFTPFVFLLSLVGVIYASVSTLQQVDLKKIIAYSSVSHMG 308

Query: 317 YVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLF 376
            V +GIFS N+QG+ GS+ L++GHG  SSALFL VG+LYDRY TR++KYY GL   +PLF
Sbjct: 309 LVTIGIFSNNIQGIIGSVFLMIGHGVTSSALFLAVGLLYDRYGTRVVKYYGGLANTMPLF 368

Query: 377 AVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLI 436
           A     F++ANIGLP TSNFIGEF  L+   + + +    +  G++LSA Y LW  NR++
Sbjct: 369 ASCFLLFSMANIGLPITSNFIGEFFCLVACFKINSLIAFLAGFGVVLSAGYSLWLSNRIL 428

Query: 437 FGNLKENYFKFLQDISKKEF 456
           FGNLK+      +D+++KEF
Sbjct: 429 FGNLKQTSITVFRDLNRKEF 448


ref|ZP_17688094.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella vinsonii subsp. arupensis OK-94-513]
gb|EJF87876.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella vinsonii subsp. arupensis OK-94-513]
(498 aa)

Score: 459 bits (1180), Expect: 1.71627e-126
Length: 477, Idn/Pos/Gap = 229/334/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI  +  V    IR  +   +   F+I++ +W  FD +  +FQ V     L
Sbjct:  23 PLVGVLLILFIKDDSEVAQHNIRNVAFFTTVFVFIISLIIWAGFDNTNAHFQMVEKSNWL  82

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W   ++  K ++I F ++E  ++  F 
Sbjct:  83 GGG-ISYHMGVDGISILFVVLSAFLLPFCILASWENVKDRLKAYMIAFLLLEVAIIGVFC 141

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+A++ +Y+E 
Sbjct: 142 ALDAMLFYVFFEGSLIPMFIIIGVWGG-ARRVYASIKFFLYTLLGSVLMLVALMAMYWEA 200

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L    F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 201 GTLDIPTLLTYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 260

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS   +PL++TLS+IAIIY SL  L Q D+KK++AYSSIAH
Sbjct: 261 LLKLGGYGFLRFSLPMFPIASADLAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAH 320

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N QG++G++  +L HG VS+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 321 MGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMP 380

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ Q + +  +F+T+G+ILSA+Y L+ Y R
Sbjct: 381 KYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVFATTGVILSAAYALYLYRR 440

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E + L P+V+LT+  G+YP   L +   ++  L+  +
Sbjct: 441 VVFGSLDKENLKVLMDLSVREKIILYPMVVLTIFFGIYPTPILKATAFSVEALINKL 497


ref|YP_422138.1| NADH dehydrogenase subunit M [Magnetospirillum magneticum AMB-1]
dbj|BAE51579.1| NADH:ubiquinone oxidoreductase subunit 4 [Magnetospirillum magneticum AMB-1]
(504 aa)

Score: 459 bits (1180), Expect: 1.78938e-126
Length: 476, Idn/Pos/Gap = 222/335/4 (46%/70%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRF---FSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL G + I+ I     V+ R     +L+ S  TF++++++   F+ +   FQ   +    
Sbjct:  14 PLAGALFILTIRGETEVVARNSRNVALLTSIATFVVSLFILAKFNGASPDFQLKETALWF  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS++F++L++ L  +C L  + + E+  KE+++ F ++E++++  F 
Sbjct:  74 PGTTIAYSMGVDGISMWFVLLSTFLTPICILAAFGSVEKRVKEYMVAFMILETMMIGMFC 133

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL+LFYIFFE VLIP+F IIG++G + R++ A+++FFLYTLLGS+L+LIA+L +YF+ 
Sbjct: 134 ALDLVLFYIFFEAVLIPMFIIIGVWGGQ-RRVYAAFKFFLYTLLGSVLMLIAMLAMYFDA 192

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
            TT+I  L    F  + QL LWLAFFASFAVKVPM P H WLP+AH EAPT GS+ILAG+
Sbjct: 193 HTTDIPSLMAHSFPFKMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTGGSVILAGV 252

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLK+G YGF+RFS+P+ P AS Y++PLIYTLSI+A+IY SL  L Q D+KK++AYSS+AH
Sbjct: 253 LLKMGAYGFIRFSIPMLPDASVYFTPLIYTLSIVAVIYTSLVALVQDDMKKLIAYSSVAH 312

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIFS   QG+EG++  +L HG V+SALFLCVGV+YDR  TR +  Y GL T +P
Sbjct: 313 MGYVTIGIFSMTTQGVEGAVFQMLSHGIVASALFLCVGVIYDRMHTREIARYGGLATRMP 372

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
           ++AV+   FT+A++GLPGT+ F+GEF++L+G+ Q +     F+ +G++L  +Y L+ Y R
Sbjct: 373 IYAVVFMLFTMASVGLPGTAGFVGEFLVLMGVFQVNTWVAFFAATGLVLGCTYMLYLYRR 432

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           ++FG L     K + D++ +E     PL++LT+ MG+ P  FL  +H ++ +L+++
Sbjct: 433 VVFGRLTREDLKGILDMTPREIAVFAPLIVLTIWMGVAPGTFLEPMHASVTKLISN 488


ref|ZP_10471843.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella vinsonii subsp. arupensis Pm136co]
gb|EJF98566.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella vinsonii subsp. arupensis Pm136co]
(498 aa)

Score: 459 bits (1180), Expect: 1.80437e-126
Length: 477, Idn/Pos/Gap = 229/334/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+FI  +  V    IR  +   +   F+I++ +W  FD +  +FQ V     L
Sbjct:  23 PLVGVLLILFIKDDSEVAQHNIRNVAFFTTVFVFIISLIIWAGFDNTNAHFQMVEKSNWL  82

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W   ++  K ++I F ++E  ++  F 
Sbjct:  83 GGG-ISYHMGVDGISILFVVLSAFLLPFCILASWENVKDRLKAYMIAFLLLEVAIIGVFC 141

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+A++ +Y+E 
Sbjct: 142 ALDAMLFYVFFEGSLIPMFIIIGVWGG-ARRVYASIKFFLYTLLGSVLMLVALMAMYWEA 200

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L    F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 201 GTLDIPTLLTYQFPTHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 260

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS   +PL++TLS+IAIIY SL  L Q D+KK++AYSSIAH
Sbjct: 261 LLKLGGYGFLRFSLPMFPIASADLAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAH 320

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N QG++G++  +L HG VS+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 321 MGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMP 380

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ Q + +  +F+T+G+ILSA+Y L+ Y R
Sbjct: 381 KYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVFATTGVILSAAYALYLYRR 440

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E + L P+V+LT+  G+YP   L +   ++  L+  +
Sbjct: 441 VVFGSLDKENLKVLMDLSVREKIILYPMVVLTIFFGIYPTPILKATAFSVEALINKL 497


ref|YP_004676671.1| NADH-quinone oxidoreductase subunit M [Hyphomicrobium sp. MC1]
emb|CCB66103.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) [Hyphomicrobium sp. MC1]
(499 aa)

Score: 459 bits (1180), Expect: 1.85011e-126
Length: 473, Idn/Pos/Gap = 229/328/3 (48%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G ++I           R+ +L  + +TF +++ +WI FD S   FQFV     L   
Sbjct:  12 PLIGAVLIATQNAEAKGNARWIALWTTLVTFAVSLLIWINFDSSSAGFQFVEEYNWLG--  69

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            ++Y +GVDGIS+ F+ILT+ L+ +C L +W + +   KE++I F ++E+++L  F  +D
Sbjct:  70 PLKYKMGVDGISMLFVILTTFLMPLCILASWQSVQVRVKEYMIAFLILETMMLGVFCALD 129

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           L+LFY+FFEG LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+A++ +Y+  GTT
Sbjct: 130 LVLFYLFFEGGLIPMFVIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAMMAMYWHAGTT 188

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +I  L    F    Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGILLK
Sbjct: 189 DIPTLLQTKFPPEMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 248

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFSLP+FP AS   +P ++TLSI+AI+Y SL  L Q D+KK++AYSS+AH+GY
Sbjct: 249 MGGYGFLRFSLPMFPNASADLAPFVFTLSIVAIVYTSLVALVQEDMKKLIAYSSVAHMGY 308

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIFS   QG++G++  +L HG VSSALFLCVGV+YDR  TR +  Y GL   +P +A
Sbjct: 309 VTMGIFSATQQGVDGAIFQMLSHGIVSSALFLCVGVIYDRMHTREIAAYGGLVERMPKYA 368

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
                FT+ANIGLPGTS FIGEF+ L+   + +    I   +G+ILSA+Y L+ Y R+IF
Sbjct: 369 FAFMVFTMANIGLPGTSGFIGEFLTLLAAFRANTWVAIIGATGMILSAAYALYLYRRVIF 428

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           G L++   K + D+S +E   L PL++LT+  G+YP+  L     ++  L+ +
Sbjct: 429 GALEKANLKSILDLSPREVAILAPLILLTIFYGVYPSPVLDVTATSVKNLVEN 481


ref|ZP_18337908.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM597]
gb|EJB03241.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM597]
(503 aa)

Score: 459 bits (1180), Expect: 1.94509e-126
Length: 434, Idn/Pos/Gap = 223/319/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++++WI FD +   FQ +     L    I Y LGVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFVVSLFIWIGFDNANPGFQMLEKHDWLGTG-IGYHLGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++ LS+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PFVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ L+G+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLLGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|YP_002280793.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii WSM2304]
gb|ACI54567.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2304]
(503 aa)

Score: 459 bits (1180), Expect: 2.11434e-126
Length: 434, Idn/Pos/Gap = 223/319/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++++WI FD +   FQ +     L    I Y LGVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFIVSLFIWIGFDNANPGFQMLEKHDWLGTG-IGYHLGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++ LS+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PFVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ L+G+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLLGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|YP_033687.1| NADH dehydrogenase subunit M [Bartonella henselae str. Houston-1]
emb|CAF27681.1| NADH dehydrogenase I, M subunit [Bartonella henselae str. Houston-1]
(489 aa)

Score: 458 bits (1179), Expect: 2.14992e-126
Length: 477, Idn/Pos/Gap = 232/334/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G I+I+FI  +       IR  +   +   F+I++ +W  FD +  +FQ V     L
Sbjct:  14 PLVGVILILFIKDDSEAARYNIRNVAFFTTVFVFIISLIIWAGFDYTNAHFQMVEKFNWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W   ++  K ++I F ++E  ++  F 
Sbjct:  74 GGG-ISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAIIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+AI+++Y+ET
Sbjct: 133 ALDAILFYVFFEGSLIPMFIIIGVWGG-ARRVYASMKFFLYTLLGSVLMLVAIMVMYWET 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L N  F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 192 GTLDIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PL++TLS+ AIIY SL  L Q D+KK++AYSSIAH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASADFAPLVFTLSVSAIIYTSLVALVQNDIKKLIAYSSIAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N Q ++G++  +L HG VS+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MGYVTMGIFAANEQAIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ Q + +  IF+T+G+ILSA+Y L+ Y R
Sbjct: 372 KYAVIFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGVILSAAYALYLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E   L P+VILT+  G+YP   L +   ++  L+  +
Sbjct: 432 VVFGSLDKENLKVLIDLSSREKFILYPMVILTIFFGIYPTPILKATAFSVKALINKL 488


ref|YP_001592665.1| NADH dehydrogenase subunit M [Brucella canis ATCC 23365]
ref|YP_005114880.1| proton-translocating NADH-quinone oxidoreductase subunit M [Brucella canis HSK A52141]
gb|ABX61894.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella canis ATCC 23365]
gb|AEW13303.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella canis HSK A52141]
(502 aa)

Score: 458 bits (1179), Expect: 2.39624e-126
Length: 476, Idn/Pos/Gap = 231/328/5 (48%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y + VDGIS+ F++L++ LI  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMSVDGISVLFVVLSAFLIPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTCVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|ZP_06107312.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
gb|EEZ11657.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
(502 aa)

Score: 458 bits (1179), Expect: 2.56165e-126
Length: 476, Idn/Pos/Gap = 231/328/5 (48%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYAFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|ZP_10832975.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. CCGE 510]
gb|EJT07129.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium sp. CCGE 510]
(503 aa)

Score: 458 bits (1179), Expect: 2.60475e-126
Length: 434, Idn/Pos/Gap = 223/318/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++++W  FD +   FQ +     L    I Y LGVDGIS+ F+IL++ L
Sbjct:  39 SLITTVFTFVVSLFIWTGFDNANPGFQMLEKHDWLGTG-IGYHLGVDGISMLFVILSTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++ LS+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PFVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVIYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S++E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSRREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|ZP_11197731.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium lupini HPC(L)]
ref|ZP_18333519.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. viciae USDA 2370]
gb|EJA98695.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. viciae USDA 2370]
gb|EKJ96494.1| NADH:ubiquinone oxidoreductase subunit M [Rhizobium lupini HPC(L)]
(503 aa)

Score: 458 bits (1179), Expect: 2.71572e-126
Length: 434, Idn/Pos/Gap = 218/317/2 (50%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TF++++++WI FD S   FQ V   +     +  Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLLTTVFTFIVSLFIWIGFDNSNPGFQMVEKHEWFG-NIAAYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W++ E+  KE++I F ++E +++  F  +D +LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWDSVEKRIKEYMIAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L ++AI+ +Y++ GTT++  L    F    Q  LWLA 
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLTMLAIMAMYWQAGTTDMTELLKYGFPAGMQTWLWLAC 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FA+F+VK+PM P H WLP+AH +APT+GS+ILAG++LKLGGYGF+RFSL +FP AS Y++
Sbjct: 217 FAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLS++AIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ NVQG++G++  +L 
Sbjct: 277 PFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREIAAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ L+G+ + + +  +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLVGVFRANTLVALFAATGVILSAAYALWLYRRVIFGALEKESLKSLLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV+LT+  G+YP
Sbjct: 457 YPLVVLTIFFGVYP 470


ref|ZP_07474626.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO2]
gb|EFM59389.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO2]
(502 aa)

Score: 458 bits (1178), Expect: 2.85514e-126
Length: 476, Idn/Pos/Gap = 231/328/5 (48%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    +     +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNVTAGAVNALIQH 487


ref|YP_052911.1| NADH dehydrogenase subunit 4 [Saprolegnia ferax]
gb|AAT40665.1| NADH dehydrogenase subunit 4 [Saprolegnia ferax]
(490 aa)

Score: 458 bits (1178), Expect: 2.92751e-126
Length: 456, Idn/Pos/Gap = 246/336/0 (53%/73%/0%)

Query:  36 IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIIL  95
           I+ FS+  S L F+I+++LWILFD++   FQF  +   L    + + +G+DGISLFFII 
Sbjct:  28 IKNFSVFYSFLIFIISLFLWILFDKTASEFQFSFTYNWLTNYNMYFSIGIDGISLFFIIA  87

Query:  96 TSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTI 155
           T+ LI +CFL ++   ++  K+F ILFF +E  LL  FST+DL++FYIFFE VLIP+F I
Sbjct:  88 TTFLIPICFLTSYEIIQKNIKDFCILFFFLEFFLLITFSTLDLIIFYIFFESVLIPMFLI 147

Query: 156 IGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLL 215
           IGI+GSR RKI+ASY  F+YTL GSL + IAI+ IY  TGTT    LYN +F    Q L 
Sbjct: 148 IGIWGSRERKIKASYYLFIYTLTGSLFMFIAIIHIYITTGTTLYILLYNYNFDLFYQKLY 207

Query: 216 WLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYAS 275
           WLAFF SFAVKVPM+PFHIWLPEAH EAPT+GS+ILAGILLKLG YG +RFSLPLFP A+
Sbjct: 208 WLAFFFSFAVKVPMLPFHIWLPEAHVEAPTAGSVILAGILLKLGSYGLIRFSLPLFPKAT 267

Query: 276 FYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLL 335
            +++PL+  L II+IIYAS+T +RQ DLK+I+AY+S+AH+  +++G+FS  ++G+EGSLL
Sbjct: 268 VFFTPLVLVLCIISIIYASITAIRQTDLKRIIAYASVAHMNMILVGLFSLTIEGIEGSLL 327

Query: 336 LILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSN 395
            +L H  V+SALFLC+GVLYDRY +R L YYSGL   +P++++   F+  ANI +PGTS+
Sbjct: 328 QMLSHSIVASALFLCIGVLYDRYHSRYLSYYSGLAHTMPIYSIFFLFYIFANISIPGTSS 387

Query: 396 FIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKE 455
           F+GE +IL G+ Q + I    S + ++L  +Y L  YNR+ +GN++ N+     DIS +E
Sbjct: 388 FVGELLILAGIFQENTIVAFLSGTSMVLGGAYSLLLYNRVCYGNIQSNFLNIFYDISYRE 447

Query: 456 FMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           F+  I L+ +TL+MGLYP IFL  +H TI +L++H+
Sbjct: 448 FLIHIILIFITLVMGLYPKIFLSCMHETIYQLVSHM 483


ref|ZP_21146357.1| NADH:ubiquinone oxidoreductase subunit M [Ochrobactrum intermedium M86]
gb|ELT48723.1| NADH:ubiquinone oxidoreductase subunit M [Ochrobactrum intermedium M86]
(502 aa)

Score: 458 bits (1178), Expect: 3.29025e-126
Length: 476, Idn/Pos/Gap = 232/327/5 (48%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F +++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTIFVFALSLVVWAGFDNSNPGFQMVEQVDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 GGG-ISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   DF    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLKYDFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+ LS+IAIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFALSVIAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRQ 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV+LT+  G+YP    +     +  L+ H
Sbjct: 432 VIFGALTKESLKALLDLSPREKLILYPLVVLTIFFGVYPTPVFNVTAGAVNALVQH 487


ref|ZP_05837092.1| NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40]
ref|ZP_05998504.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
gb|EEW91220.1| NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40]
gb|EEY32474.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
(502 aa)

Score: 458 bits (1178), Expect: 3.29025e-126
Length: 476, Idn/Pos/Gap = 231/328/5 (48%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F++++ +W  FD S   FQ V     +
Sbjct:  14 PLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNPGFQMVEELDWM  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y + VDGIS+ F++L++ LI  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  74 G-SGISYHMSVDGISVLFVVLSAFLIPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 133 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   +F    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 192 GTMNIVELLQYNFPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+TLS++AIIY SL  + Q D+KK++AYSS+AH
Sbjct: 252 LLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMKKLIAYSSVAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 372 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRK 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV LT+  G+YP    ++    +  L+ H
Sbjct: 432 VIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAVNALIQH 487


ref|ZP_04680027.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ochrobactrum intermedium LMG 3301]
gb|EEQ95533.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ochrobactrum intermedium LMG 3301]
(511 aa)

Score: 458 bits (1178), Expect: 3.31782e-126
Length: 476, Idn/Pos/Gap = 232/327/5 (48%/68%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G ++I+ I  +       IR  +L+ +   F +++ +W  FD S   FQ V     +
Sbjct:  23 PLVGALLILLIKDDSEASRRNIRNVALLTTIFVFALSLVVWAGFDNSNPGFQMVEQVDWM  82

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W + E+  KE++I F ++E+L++  F 
Sbjct:  83 GGG-ISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLILETLMIGVFC 141

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +DL LFY+FFE  LIP+F IIG++G + R++ AS +FFLYTLLGS+L+LIAI+ +Y++ 
Sbjct: 142 ALDLFLFYVFFEASLIPMFIIIGVWGGK-RRVYASLKFFLYTLLGSVLMLIAIMAMYWQA 200

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT NI  L   DF    Q  LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGI
Sbjct: 201 GTMNIVELLKYDFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 260

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGF+RFSLP+FP AS  ++P I+ LS+IAIIY SL  + Q D+KK++AYSS+AH
Sbjct: 261 LLKLGGYGFIRFSLPMFPLASADFAPFIFALSVIAIIYTSLVAMVQEDMKKLIAYSSVAH 320

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           + YV +GIF+ N QGL+G++  +L HG VS ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 321 MAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIAAFGGLVNNMP 380

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV    FT+AN+GLPGTS FIGEF+ L G+ + +    +F+T+G+ILSA+Y LW Y +
Sbjct: 381 KYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILSAAYALWLYRQ 440

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           +IFG L +   K L D+S +E + L PLV+LT+  G+YP    +     +  L+ H
Sbjct: 441 VIFGALTKESLKALLDLSPREKLILYPLVVLTIFFGVYPTPVFNVTAGAVNALVQH 496


ref|ZP_12693612.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hyphomicrobium denitrificans 1NES1]
gb|EHB75238.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hyphomicrobium denitrificans 1NES1]
(495 aa)

Score: 458 bits (1178), Expect: 3.51737e-126
Length: 473, Idn/Pos/Gap = 230/329/3 (48%/69%/0%)

Query:  18 PLLGCIIIIFIPRNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFE  77
           PL+G ++I           R+ +L  + +TF +++ +W  FD +   FQFV     L   
Sbjct:  12 PLVGALLIAAQNAEAKQNARWIALWTTLVTFFVSLLIWWDFDTTATGFQFVEEHAWLG--  69

Query:  78 LIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTID 137
            ++Y LGVDGIS+ FIILT+ L+ +C L +W + +   KE++I F ++E+L+L  FS +D
Sbjct:  70 PLKYKLGVDGISMLFIILTTFLMPLCILASWVSVQNRVKEYMIAFLVLETLMLGVFSALD 129

Query: 138 LLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTT 197
           L+LFY+FFEG LIP+F IIG++G + R++ AS++FFLYTLLGS+L+L+A++ +Y+  GTT
Sbjct: 130 LVLFYLFFEGGLIPMFIIIGVWGGK-RRVYASFKFFLYTLLGSVLMLLAMMAMYWHAGTT 188

Query: 198 NINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLK 257
           +I  L    F    Q  LW+AFFASFAVK+PM P H WLP+AH EAPT+GS+ILAGILLK
Sbjct: 189 DIPTLLQTKFPPEMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLK 248

Query: 258 LGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGY 317
           +GGYGFLRFSLP+FP AS   +P +++LSI+AIIY SL  L Q D+KK++AYSS+AH+GY
Sbjct: 249 MGGYGFLRFSLPMFPNASADLAPFVFSLSIVAIIYTSLVALVQEDMKKLIAYSSVAHMGY 308

Query: 318 VILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFA 377
           V +GIF+ + QG++G++  +L HG VSSALFLCVGV+YDR  TR +  Y GL   +P +A
Sbjct: 309 VTMGIFTGSQQGIDGAIFQMLSHGLVSSALFLCVGVIYDRMHTREIAAYGGLVERMPKYA 368

Query: 378 VLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIF 437
                FT+AN+GLPGTS FIGEF+ L+   + +    I +T+GIILSA+Y L+ Y R+IF
Sbjct: 369 AAFMVFTMANVGLPGTSGFIGEFLTLMAAFKANTWVAILATTGIILSAAYALYLYRRIIF 428

Query: 438 GNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTH 490
           G L++   + + D+S +E   L PL++LT+  G YP   L     ++  L+ +
Sbjct: 429 GVLEKANLRSILDLSPREVAILAPLILLTIFYGFYPAPVLDVTATSVKNLVQN 481


ref|YP_004278510.1| NADH dehydrogenase I subunit M [Agrobacterium sp. H13-3]
gb|ADY64190.1| NADH dehydrogenase I chain M [Agrobacterium sp. H13-3]
(503 aa)

Score: 457 bits (1177), Expect: 4.59383e-126
Length: 434, Idn/Pos/Gap = 219/316/2 (50%/72%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SL+ +  TFL+++++WI FD S   FQ V  K      +  Y LGVDGIS+ F+ILT+ L
Sbjct:  39 SLLTTVFTFLVSLFVWIGFDNSNPGFQMV-EKHAWFGNIAAYHLGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE++I F ++E +++  F  +D +LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWQSVEKRIKEYMIAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L ++AI+ +Y+++GTT++  L    F    Q  LWLA 
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLTMLAIMAMYWQSGTTDMTELLKYGFPAGMQTWLWLAC 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FA+F+VK+PM P H WLP+AH +APT+GS+ILAG++LKLGGYGF+RFSL +FP AS Y++
Sbjct: 217 FAAFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           P ++TLS++AIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ NVQG++G++  +L 
Sbjct: 277 PFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV    FT+AN+GLPGTS F+GE
Sbjct: 337 HGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + + +  +F+ +G+ILSA+Y LW Y R+IFG L++   K + D+S +E + L
Sbjct: 397 FLTLIGVFRANTLVALFAATGVILSAAYALWLYRRVIFGALEKESLKSMLDLSTREKVIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|ZP_10458750.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella elizabethae Re6043vi]
ref|ZP_17689729.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella elizabethae F9251]
gb|EJF83783.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella elizabethae Re6043vi]
gb|EJF95693.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella elizabethae F9251]
(498 aa)

Score: 457 bits (1176), Expect: 4.95208e-126
Length: 480, Idn/Pos/Gap = 235/335/11 (48%/69%/2%)

Query:  18 PLLGCIIIIFIP------RNQLVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISK  71
           PL+G ++I+FI       R+ +  + FF+ I     F+I++ +WI FD S   FQ V   
Sbjct:  23 PLVGVLLILFIKDDSEAARHNIRNVAFFTTI---FVFVISLIIWIGFDSSNPNFQMVEKF  79

Query:  72 KILNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLN 131
             L    I Y +GVDGIS+ F++L++ L+  C L +W   +E  K ++I F ++E  ++ 
Sbjct:  80 SWLG-NGISYHMGVDGISILFVVLSAFLLPFCILASWENVKERLKAYMIAFLLLEVAIIG 138

Query: 132 AFSTIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIY 191
            F  +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+A++ +Y
Sbjct: 139 VFCALDAILFYVFFEGSLIPMFIIIGVWGG-ARRVYASIKFFLYTLLGSVLMLVALMAMY 197

Query: 192 FETGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIIL 251
           ++ GT +I  L N  F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+IL
Sbjct: 198 WQAGTLDIPTLLNYQFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVIL 257

Query: 252 AGILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSS 311
           AG+LLKLGGYGFLRFSLP+FP AS  ++PL++TLS+IAIIY SL  L Q D+KK++AYSS
Sbjct: 258 AGVLLKLGGYGFLRFSLPMFPIASADFAPLVFTLSLIAIIYTSLVALVQSDIKKLIAYSS 317

Query: 312 IAHIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTT 371
           IAH+GYV +GIF+ N Q ++G++  +L HG VS+ALFLCVGV+YDR  TR +  + GL  
Sbjct: 318 IAHMGYVTMGIFAANEQAIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVN 377

Query: 372 FIPLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWF 431
            +P +AV+   FT+AN+GLPGTS F+GEF+ LIG+ Q + +  I +T+G+ILSA+Y L+ 
Sbjct: 378 NMPKYAVVFLIFTMANVGLPGTSGFLGEFLTLIGVFQVNKLVVILATTGVILSAAYALYL 437

Query: 432 YNRLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           Y R+IFG+L +   K L D+S +E   L P+VILT+  G+YP   L +   ++  L+  +
Sbjct: 438 YRRVIFGSLDKENLKVLIDLSSREKFILYPMVILTIFFGIYPTPLLKATAFSVEALINKL 497


ref|ZP_17686982.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella washoensis Sb944nv]
gb|EJF77997.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bartonella washoensis Sb944nv]
(489 aa)

Score: 457 bits (1176), Expect: 5.51944e-126
Length: 477, Idn/Pos/Gap = 231/335/5 (48%/70%/1%)

Query:  18 PLLGCIIIIFIPRNQLVL---IRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKIL  74
           PL+G I+I+FI  +  V    IR  +   S   F+I++ +W  FD +  +FQ V     L
Sbjct:  14 PLVGVILILFIKDDSEVARHNIRNVAFFTSVFVFIISLIIWAGFDHTNAHFQMVEKFNWL  73

Query:  75 NFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFS 134
               I Y +GVDGIS+ F++L++ L+  C L +W   ++  K ++I F ++E  ++  F 
Sbjct:  74 GGG-ISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLLLEVAIIGVFC 132

Query: 135 TIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFET 194
            +D +LFY+FFEG LIP+F IIG++G   R++ AS +FFLYTLLGS+L+L+AI+++Y+E 
Sbjct: 133 ALDAILFYVFFEGSLIPMFIIIGVWGG-ARRVYASMKFFLYTLLGSVLMLVAIMVMYWEA 191

Query: 195 GTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254
           GT +I  L    F    Q+ LWLAFFASFAVK+PM P H WLP+AH EAPT+GS+ILAG+
Sbjct: 192 GTLDIPTLLTYRFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGV 251

Query: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314
           LLKLGGYGFLRFSLP+FP AS  ++PL++TLS+IAIIY SL  L Q D+KK++AYSSIAH
Sbjct: 252 LLKLGGYGFLRFSLPMFPLASADFAPLVFTLSLIAIIYTSLVALVQNDIKKLIAYSSIAH 311

Query: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374
           +GYV +GIF+ N Q ++G++  +L HG VS+ALFLCVGV+YDR  TR +  + GL   +P
Sbjct: 312 MGYVTMGIFAANEQSIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAFGGLVNNMP 371

Query: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434
            +AV+   FT+AN+GLPG+S F+GEF+ LIG+ + + +  +F+T+G+ILSA+Y L+ Y R
Sbjct: 372 KYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFEVNKLVVVFATTGVILSAAYALYLYRR 431

Query: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLLTHI 491
           ++FG+L +   K L D+S +E + L P+VILT+  G+YP   L +   ++  L+  +
Sbjct: 432 VVFGSLDKENLKVLLDLSLREKIILYPMVILTIFFGIYPTSILKATAFSVEALINKL 488


ref|ZP_11963783.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli CNPAF512]
gb|EGE55714.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli CNPAF512]
(503 aa)

Score: 457 bits (1176), Expect: 5.85141e-126
Length: 434, Idn/Pos/Gap = 224/317/2 (51%/73%/0%)

Query:  40 SLIISSLTFLITIYLWILFDESYFYFQFVISKKILNFELIQYFLGVDGISLFFIILTSLL  99
           SLI +  TF++++ +WI FD +   FQ       L    I Y +GVDGIS+ F+ILT+ L
Sbjct:  39 SLITTVFTFIVSLVIWIGFDNANPGFQMEQKFDWLGTG-IGYHVGVDGISMLFVILTTFL  97

Query: 100 IFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFSTIDLLLFYIFFEGVLIPIFTIIGIF 159
           +  C L +W + E+  KE+++ F ++E++++  F ++D++LFY+FFE  LIP+F IIG++
Sbjct:  98 MPFCVLASWLSIEKRLKEYMVAFLILETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVW 157

Query: 160 GSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETGTTNINFLYNVDFYERKQLLLWLAF 219
           G + R + ASY+FFLYTLLGS+L+L+AI+ +Y++ GTT+I  L    F    Q  LWLAF
Sbjct: 158 GGKDR-VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAYKFPPALQTWLWLAF 216

Query: 220 FASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGILLKLGGYGFLRFSLPLFPYASFYYS 279
           FASFAVK+PM P H WLP+AH +APT+GS+ILAG+LLKLGGYG +RFSL +FP AS Y++
Sbjct: 217 FASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFA 276

Query: 280 PLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAHIGYVILGIFSFNVQGLEGSLLLILG 339
           PL++ LS+IAIIY SL  + Q D+KK++AYSS+AH+GYV +GIF+ N+QG++GS+  +L 
Sbjct: 277 PLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLS 336

Query: 340 HGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIPLFAVLLFFFTLANIGLPGTSNFIGE 399
           HG VS ALFLCVGV+YDR  TR +  Y GL   +P +AV +  FT+AN+GLPGTS FIGE
Sbjct: 337 HGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGE 396

Query: 400 FIILIGLIQTSVIATIFSTSGIILSASYCLWFYNRLIFGNLKENYFKFLQDISKKEFMAL 459
           F+ LIG+ + +    +F+ +G+ILSA+Y LW Y R+IFG L++   K L D+S +E + L
Sbjct: 397 FLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDLSPREQLIL 456

Query: 460 IPLVILTLIMGLYP 473
            PLV LT+  G+YP
Sbjct: 457 YPLVALTIFFGVYP 470


ref|YP_005031300.1| NADH-quinone oxidoreductase, subunit M [Azospirillum brasilense Sp245]
emb|CCC97869.1| NADH-quinone oxidoreductase, subunit M [Azospirillum brasilense Sp245]
(508 aa)

Score: 457 bits (1175), Expect: 6.20334e-126
Length: 475, Idn/Pos/Gap = 218/332/5 (45%/69%/1%)

Query:  18 PLLGCIIIIFIPRNQ----LVLIRFFSLIISSLTFLITIYLWILFDESYFYFQFVISKKI  73
           PL G  +I+   R      +  +R+ +L  + +TF++++++W  FD     +Q V     
Sbjct:  14 PLAGVALILLFCRGNTPDVVRNVRYVALWTTVITFVLSLFIWFNFDPRNPGYQLVEKAAW  73

Query:  74 LNFELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAF 133
           +    I Y +GVDGIS+ F+IL++ L+ +C L +W A +   KE++I F ++E+L++  F
Sbjct:  74 IPEFGISYHMGVDGISMLFVILSTFLMPLCILSSWEAVQTRVKEYMIAFLVLETLMVGMF 133

Query: 134 STIDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFE 193
             +D +LFY+FFEGVLIP+F IIG++G   R++ A+++FFLYTLLGS+L+L+AIL +YF 
Sbjct: 134 CALDFVLFYMFFEGVLIPMFLIIGVWGG-ARRVYAAFKFFLYTLLGSVLMLLAILAMYFA 192

Query: 194 TGTTNINFLYNVDFYERKQLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAG 253
            GTT+I  +    F    QL LWLAFFASFAVKVPM P H WLP+AH EAPT+GS+ILAG
Sbjct: 193 AGTTDIPTITATHFPRNMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAG 252

Query: 254 ILLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIA 313
           +LLK+GGYGFLRF++P+ P A+ Y++P++Y LSI+A+IY SL  L Q D+KK++AYSS+A
Sbjct: 253 VLLKMGGYGFLRFNIPMLPEATEYFAPMVYALSIVAVIYTSLVALAQEDMKKLIAYSSVA 312

Query: 314 HIGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFI 373
           H+G+V +G+F+ N QG+EGS+  +L HG VS ALFLCVGV+YDR  TR +  Y GL   +
Sbjct: 313 HMGFVTIGMFALNQQGIEGSIFTMLSHGIVSGALFLCVGVVYDRLHTREIARYGGLVKNM 372

Query: 374 PLFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYN 433
           P +AV+  F T+A++GLPGTS F+GEF++L+G  + +      + +G+IL  +Y LW + 
Sbjct: 373 PKYAVVFLFMTMASVGLPGTSGFVGEFLVLLGAFRDNTWVAFLAATGLILGPAYALWLFR 432

Query: 434 RLIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYPNIFLHSIHITILRLL 488
           R+++G L +   + + D++ +E    +PL+++ L MG+YPN FL+    ++ +L+
Sbjct: 433 RVVYGKLVKADVRAMFDLNTREVAIFLPLIVVVLWMGVYPNSFLNVTSASVGQLI 487


Reference: Matsuzaki, M. et al. Nature 428, 653-657 (2004)
Nozaki, H. et al. BMC Biology 5, 28 (2007)
Last modified: 2019-12-26 17:05:39 JST